お問い合わせ

オープンデータを加工して共有しよう

テーブルデータの変換と公開をサポートするサイト

データセットの情報

GenoCon2 Challenge A - Circadian Coexpression (DIURNAL + ATTED-II promoter motif)

モバイルビューを開く
Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the CEG motifs as calculated by ATTED-II.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
15

評価指数

いいね！
0
Loading...



詳細情報を見たいファイルをプルダウンメニューから選択して下さい。
APIリストを表示
   
#LINK
#lang en
#attribution_name GenoCon_2
#attribution_url http://atted.jp/download.shtml
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_ATTED_DD_DDHC
#download_from http://linkdata.org/work/rdf1s288i
#namespace ATTED http://atted.jp/data/locus/
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Flowering http://linkdata.org/work/rdf1s220i/Flowering.html#
#namespace Fruit_Seeds http://linkdata.org/work/rdf1s220i/Fruit_Seeds.html#
#namespace HeptamerElement http://linkdata.org/work/rdf1s218i/Heptamer_elements.html#
#namespace Leaf http://linkdata.org/work/rdf1s220i/Leaf.html#
#namespace Root http://linkdata.org/work/rdf1s220i/Root.html#
#namespace Seedling http://linkdata.org/work/rdf1s220i/Seedling.html#
#namespace Stem http://linkdata.org/work/rdf1s220i/Stem.html#
#namespace Whole_Plant http://linkdata.org/work/rdf1s220i/Whole_Plant.html#
#property motif position motif motif sequence CEG Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd float string string float string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
ATTED:At1g01030.html 49 | 51 | 53 | 88 HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:TCTCTCT | HeptamerElement:ATGGGCC TCTCTCT | TCTCTCT | TCTCTCT | ATGGGCC 0.06 | 0.07 | 0.06 | 0.08 261568_at Circadian_Condition:DD_DDHC 10 0.821110 5.768690 6.624430 7.175760 8.329800 6.361570 6.056670 5.931140 8.760110 6.762580 5.591340 5.324210 5.822640 10.953452 0.431633
ATTED:At1g01050.html 31 HeptamerElement:ATATAAA ATATAAA 0.08 261579_at Circadian_Condition:DD_DDHC 18 0.715869 1210.860000 1053.430000 1022.000000 1061.240000 1212.670000 1086.790000 1150.100000 956.554000 1156.530000 1142.260000 1141.670000 1137.610000 12.092856 28.170459
ATTED:At1g01060.html 104 | 105 | 106 HeptamerElement:ACGTGTC | HeptamerElement:CACGTGT | HeptamerElement:CCACGTG ACGTGTC | CACGTGT | CCACGTG 0.09 | 0.10 | 0.07 261569_at Circadian_Condition:DD_DDHC 0 0.933184 310.489000 207.992000 5.148140 3.982130 6.434480 157.119000 371.614000 413.806000 69.798700 12.804200 9.674470 143.560000 19.128643 94.166497
ATTED:At1g01070.html 27 | 28 | 97 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:AAAATAT ATAAATA | TATAAAT | AAAATAT 0.08 | 0.10 | 0.07 261576_at Circadian_Condition:DD_DDHC 3 0.651118 44.621900 46.187300 16.862500 35.690900 17.007800 26.947800 21.931300 44.203300 32.733600 29.065000 17.282100 37.165700 20.942845 4.309034
ATTED:At1g01080.html 95 | 96 HeptamerElement:ATGGGCC | HeptamerElement:AATGGGC ATGGGCC | AATGGGC 0.08 | 0.09 261577_at Circadian_Condition:DD_DDHC 12 0.545759 107.567000 159.298000 173.358000 184.597000 206.954000 155.523000 115.588000 164.983000 130.624000 91.837200 150.258000 170.998000 8.626915 6.306434
ATTED:At1g01090.html 32 | 33 | 34 | 35 HeptamerElement:TATATAA | HeptamerElement:ATATATA | HeptamerElement:TATATAT | HeptamerElement:ATATATA TATATAA | ATATATA | TATATAT | ATATATA 0.11 | 0.10 | 0.10 | 0.10 261583_at Circadian_Condition:DD_DDHC 2 0.731487 1905.980000 2127.740000 1710.560000 1748.940000 2012.190000 1674.420000 2076.730000 1909.110000 1686.990000 1462.690000 1735.420000 1677.640000 19.199017 78.235833
ATTED:At2g26500.html 40 | 41 HeptamerElement:GATATTT | HeptamerElement:AGATATT GATATTT | AGATATT 0.10 | 0.10 245044_at Circadian_Condition:DD_DDHC 13 0.401872 1297.060000 2020.620000 1868.180000 2387.440000 3278.610000 2219.760000 2701.560000 3161.840000 3071.900000 2797.920000 2445.760000 3716.720000 9.615841 136.814678
ATTED:At2g26510.html 61 HeptamerElement:ATAAATA ATAAATA 0.07 245046_at Circadian_Condition:DD_DDHC 21 0.300924 784.990000 713.288000 631.479000 900.451000 763.532000 786.660000 629.956000 651.409000 757.792000 409.489000 606.840000 673.366000 16.286804 12.720298
ATTED:At2g26520.html 60 HeptamerElement:AAATATC AAATATC 0.12 245040_at Circadian_Condition:DD_DDHC 8 0.669986 4.767990 4.276150 4.064400 5.364710 5.652100 3.241990 4.372800 4.068510 4.117720 4.849230 3.851040 3.308320 5.371387 0.208508
ATTED:At2g26530.html 40 | 182 HeptamerElement:AATGGGC | HeptamerElement:AAATATC AATGGGC | AAATATC 0.07 | 0.07 245041_at Circadian_Condition:DD_DDHC 12 0.622607 6.500010 7.664830 6.073490 5.977440 4.418870 4.737680 5.439890 6.553430 5.935840 13.615000 5.697770 6.974110 8.235001 0.574835
ATTED:At2g26540.html 66 | 67 | 87 | 88 | 89 | 132 | 133 HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TATTGGG | HeptamerElement:TTGGGCC | HeptamerElement:ATTGGGC TTGGGCT | ATTGGGC | TTGGGCT | ATTGGGC | TATTGGG | TTGGGCC | ATTGGGC 0.07 | 0.08 | 0.06 | 0.08 | 0.06 | 0.07 | 0.07 245042_at Circadian_Condition:DD_DDHC 20 0.505680 16.991600 47.012100 38.121900 31.609600 61.242400 56.739000 44.509600 29.673600 22.700200 10.775200 23.145800 22.411400 15.153281 2.770119
ATTED:At2g26550.html 120 HeptamerElement:AATAATT AATAATT 0.07 245027_at Circadian_Condition:DD_DDHC 5 0.660500 18.800000 34.471900 26.844800 11.724900 16.174200 16.780200 15.825400 17.320300 13.234700 6.852190 12.338400 13.614000 14.577868 3.047003
ATTED:At2g26560.html 27 | 28 | 29 | 30 | 176 HeptamerElement:ATAAATA | HeptamerElement:TATAAAT | HeptamerElement:CTATAAA | HeptamerElement:CCTATAA | HeptamerElement:AAAAGTC ATAAATA | TATAAAT | CTATAAA | CCTATAA | AAAAGTC 0.08 | 0.10 | 0.09 | 0.07 | 0.07 245038_at Circadian_Condition:DD_DDHC 15 0.367355 7.359650 6.829200 7.943410 6.944200 5.323400 9.347840 10.424600 7.716660 11.925100 14.935700 11.987700 10.874300 4.200118 0.495822
ATTED:At2g26590.html 86 | 87 | 88 | 151 HeptamerElement:TGGGCTT | HeptamerElement:TTGGGCT | HeptamerElement:ATTGGGC | HeptamerElement:TTGACTT TGGGCTT | TTGGGCT | ATTGGGC | TTGACTT 0.09 | 0.06 | 0.08 | 0.06 245045_at Circadian_Condition:DD_DDHC 0 0.662230 676.838000 551.680000 574.926000 539.943000 471.662000 456.261000 597.236000 380.327000 413.056000 319.634000 342.419000 337.388000 20.380200 38.615453
ATTED:At1g01010.html 261585_at Circadian_Condition:DD_DDHC 19 0.597084 7.267360 9.425840 7.421170 8.471690 7.249960 14.457200 11.177600 10.451800 12.391500 13.253200 15.618100 15.322900 23.929013 0.935314
ATTED:At1g01040.html 261584_at Circadian_Condition:DD_DDHC 0 0.796968 58.596500 45.985800 44.722500 23.411100 36.241000 41.576300 37.436800 35.601800 54.275000 13.527400 56.173000 55.022300 17.472196 4.415600
ATTED:At2g26570.html 245028_at Circadian_Condition:DD_DDHC 23 0.682467 82.918300 125.883000 86.000300 59.586700 77.374900 137.347000 115.157000 182.403000 105.351000 56.590200 125.121000 128.001000 18.607042 14.498692
ATTED:At2g26580.html 245029_at Circadian_Condition:DD_DDHC 2 0.694475 20.916400 17.996800 16.271300 15.127100 17.543100 15.722700 22.781300 23.872500 19.371900 16.766600 19.064300 20.107500 19.122071 1.264889
* Row count is limited to 100.