お問い合わせ

オープンデータを加工して共有しよう

テーブルデータの変換と公開をサポートするサイト

データセットの情報

Circadian Genomic (DIURNAL + PPDB promoter motif) Full

Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB. Gene Loci without expression data or motif data were removed from this database.

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_PPDB_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_PPDB_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PPDB_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_PPDB_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_PPDB_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_PPDB_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_PPDB_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_PPDB_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PPDB_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_PPDB_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_PPDB_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_PPDB_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_PPDB_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
65

評価指数

いいね!
2
Loading...

downloadダウンロード

ファイル名
DiurnalHours_PPDB_COL_LDHH
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_COL_SD
テーブルデータ (テキスト)
2013.1.8
10.2MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.6MB
DiurnalHours_PPDB_DD_DDHC
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_LDHC
テーブルデータ (テキスト)
2013.1.8
10.2MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.6MB
DiurnalHours_PPDB_LDHH_SM
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_LDHH_ST
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_LER_SD
テーブルデータ (テキスト)
2013.1.8
10.2MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.6MB
DiurnalHours_PPDB_LIGHT5_HIF138_13
テーブルデータ (テキスト)
2013.1.8
10.4MB
テーブルデータ (Excel)
2013.1.8
16.1MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LIGHT5_HIF138_8
テーブルデータ (テキスト)
2013.1.8
10.4MB
テーブルデータ (Excel)
2013.1.8
16.1MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LIGHT5_znknOX
テーブルデータ (テキスト)
2013.1.8
10.4MB
テーブルデータ (Excel)
2013.1.8
16.1MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LL12_LDHH
テーブルデータ (テキスト)
2013.1.8
10.4MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LL23_LDHH
テーブルデータ (テキスト)
2013.1.8
10.4MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.8MB
DiurnalHours_PPDB_LLHC
テーブルデータ (テキスト)
2013.1.8
10.2MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.6MB
DiurnalHours_PPDB_LL_LDHC
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_LL_LLHC
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_lhyox_SD
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_longday
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_lux_2_LDHH
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_phyB9_SD
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
DiurnalHours_PPDB_shortday
テーブルデータ (テキスト)
2013.1.8
10.3MB
テーブルデータ (Excel)
2013.1.8
16.7MB
RDF (Turtle)
2013.1.8
45.7MB
投稿者 メッセージ送信
共同編集者
関連するWebサイト
データのリファレンス
合計ダウンロード数 1226
最初に登録した日 Oct 10, 2012
最後に更新した日 Jan 15, 2013

↓画像をクリックすると拡大します LODクラウド(全データセット)を見る

ニュースフィード