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データセットの情報

Mammalian PromoterCAD template files for adding regulatory motif data

モバイルビューを開く

These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Brain_Neural_tissues_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:amygdala label:cerebellum label:cerebral_cortex label:cerebral_cortex_prefrontal label:dorsal_root_ganglia label:dorsal_striatum label:hippocampus label:hypothalamus label:nucleus_accumbens label:olfactory_bulb label:spinal_cord
#object_type_xsd string string string float string float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
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Gene:11972 1415671_at 6930.98351 4522.27824 7257.22882 8561.5823 6242.91573 4928.94158 5277.24461 5169.55767 5657.54235 7749.51898 6210.3229
Gene:57437 1415672_at 2895.06577 4750.18704 4610.49687 3853.08771 3991.77175 5226.63867 4339.20456 3909.90879 3591.82455 5113.15269 9752.36112
Gene:100678 1415673_at 364.51407 402.22709 304.21913 339.40217 289.70548 351.11249 398.80495 189.72424 312.5392 290.2461 245.53414
Gene:60409 1415674_a_at 908.08888 547.85187 564.87864 575.59808 2151.20726 998.73022 683.40748 1376.35352 783.5825 513.10206 970.46768
Gene:13481 1415675_at 515.58933 341.10617 363.89861 384.29916 359.53768 505.95921 444.20628 471.48566 454.12506 378.70461 280.19867
Gene:19173 1415676_a_at 2777.79625 1835.2737 1903.76328 1913.235 3275.76064 2278.2904 3346.93374 2063.4219 1907.93536 2494.08548 2318.06804
Gene:52585 1415677_at 674.21156 447.07709 604.16775 622.70805 2849.71416 488.87513 820.30597 886.94399 564.17327 702.66005 1303.936
Gene:19042 1415678_at 1621.05673 1246.48026 2121.75532 2336.51504 2972.16849 2113.23353 1516.25238 1684.14349 1776.78342 1627.00436 2306.37653
Gene:66340 1415679_at 1950.23928 2942.72938 1792.22339 1345.00317 2268.32159 3837.64784 1824.63431 2708.71229 1874.46743 1684.28846 2704.67864
Gene:17222 1415680_at 161.69607 243.80502 128.89391 137.03779 232.56323 195.45973 190.03773 163.18434 143.90621 177.66378 175.11842
Gene:94067 1415681_at 687.10336 534.68266 491.12454 524.47863 765.67425 511.24734 478.17183 534.81576 504.64434 569.87535 686.98491
Gene:65246 1415682_at 314.51015 218.45769 234.74915 296.0058 216.82034 361.84822 284.69872 259.89539 246.61873 249.89696 227.3114
Gene:18107 1415683_at 1251.30108 1161.66137 1276.26936 1435.29389 1748.47944 923.54431 1884.6882 1013.89373 1056.20216 1163.44556 991.84092
Gene:11793 1415684_at 179.88294 116.82297 132.55661 168.78973 508.18692 177.08847 192.34524 210.89449 171.59075 175.54713 456.98287
Gene:76784 1415685_at 208.75239 226.43186 225.48324 231.5624 398.71364 235.44048 200.31459 246.12365 270.04789 122.43416 179.31409
Gene:68365 1415686_at 1944.31185 1543.90287 2207.99502 1886.36407 1628.32172 1835.92345 1558.25375 1933.32841 2124.35661 2303.29746 1663.35695
Gene:19156 1415687_a_at 17805.70103 21510.34501 19352.21891 17945.62217 16440.18626 8606.73749 14807.47752 17809.03598 12803.31718 20864.8897 19049.98902
Gene:67128 1415688_at 1062.12538 1344.22372 1351.62244 1487.4183 1020.89718 2224.01874 949.78198 498.06414 865.20804 1024.97293 867.29959
Gene:72739 1415689_s_at 206.15688 532.33333 323.10858 343.12105 150.72158 292.30752 231.87876 237.32336 434.43873 773.60827 303.52472
Gene:94064 1415690_at 2757.94145 1553.26292 1839.23127 1745.79676 3670.23216 3231.67952 2415.76095 2607.4253 2972.73287 1945.56863 2147.09481
Gene:13383 1415691_at 2556.28194 2358.1034 3322.87433 2292.88376 194.85516 3826.42927 1034.13222 1386.29845 3381.21335 2227.98108 1226.75353
Gene:12330 1415692_s_at 6883.97516 8576.12656 6945.71452 6118.81719 6541.03604 5301.93155 6323.60966 11848.37568 5854.40096 5532.08285 7570.43535
Gene:67819 1415693_at 221.56638 213.81684 117.36102 103.11975 199.27102 140.43024 182.16118 225.55586 105.82164 133.86235 200.86682
Gene:22375 1415694_at 249.26243 171.25326 245.05122 228.69616 330.15541 175.41573 198.66754 232.99895 218.63301 193.47578 351.70744
Gene:26440 1415695_at 3370.06667 3295.99636 2807.41919 3068.55872 5460.6485 4693.85749 3305.15881 3606.97599 3532.62058 2844.35833 2777.56338
Gene:20224 1415696_at 1076.16036 770.60492 1002.52927 1059.38477 845.82667 976.59119 876.25329 1222.23291 980.4505 1075.47998 814.3639
Gene:23881 1415697_at 944.28064 413.55242 502.94246 668.8511 800.26815 622.49513 633.33089 772.19924 497.6554 372.00157 707.25302
Gene:105348 1415698_at 146.48156 380.954 176.3804 143.20004 105.91731 110.8913 699.47603 81.12887 127.75369 78.02156 104.52567
Gene:209318 1415699_a_at 1818.56697 1384.97121 1426.56968 1513.02924 1472.29343 1518.21568 1649.15808 1534.53695 1810.0741 1453.76196 1533.31536
Gene:67437 1415700_a_at 2079.82158 1983.84374 1355.44885 1804.03216 1965.54156 2666.25004 1930.49378 2138.93842 2134.8111 1935.02791 1938.60198
Gene:65019 1415701_x_at 19037.15809 16317.01047 17321.99053 16925.37209 19926.40861 25706.57885 18057.36078 24280.44568 22318.10678 20429.74272 18705.34162
Gene:13016 1415702_a_at 2455.35359 4152.95862 3695.24404 3094.92857 3061.33481 2107.86886 2463.85212 2934.55617 2693.64831 3954.61574 3148.95264
Gene:59026 1415703_at 1111.91456 1266.32507 1300.43042 1079.04872 1306.21057 1093.89059 1246.34187 1742.44065 1730.47289 1832.77088 1916.3598
Gene:321022 1415704_a_at 1138.06966 895.33785 1032.1083 960.59531 1460.72002 1106.68731 882.22003 1342.08282 929.26871 1814.32685 1785.26536
Gene:66818 1415705_at 628.64013 343.35609 698.00988 594.77961 544.63908 708.85132 555.15895 300.53853 446.15586 420.52791 268.97433
Gene:12847 1415706_at 3311.62916 3073.98877 2754.12236 2791.84798 3603.41888 1829.95787 2834.65369 3669.26792 2213.31354 2702.53862 3697.8533
Gene:99152 1415707_at 674.64513 777.69119 579.69695 576.58277 1351.28386 469.27897 644.39548 1024.59136 610.87221 672.61057 994.60865
Gene:544752 1415708_at 2364.47134 1336.1929 1478.40546 1520.62368 1058.26655 3002.31918 1851.114 3563.18122 2447.47418 1666.31039 1091.21134
Gene:107338 1415709_s_at 184.03692 244.39794 281.96036 193.2214 420.27404 128.4765 185.87291 236.36691 221.52417 241.39057 404.67303
Gene:231430 1415710_at 246.97333 210.29264 251.39346 301.99976 515.88531 270.15821 222.71929 285.98614 244.44131 201.96694 180.36418
Gene:211673 1415711_at 954.01642 997.66537 949.73892 846.55843 1315.31394 938.76252 795.11138 709.51257 650.77744 874.22145 790.63072
Gene:360216 1415712_at 263.44123 863.29987 411.64531 338.09522 374.12022 418.3732 255.0163 355.77858 471.33107 699.39127 380.18397
Gene:27225 1415713_a_at 1197.62897 1062.55757 1076.51601 910.11586 1013.44394 632.67273 1003.57956 1667.22385 979.57276 805.3435 1188.22807
Gene:66618 1415714_a_at 685.82914 625.06089 648.64298 662.12215 633.8549 1152.21441 570.92566 709.20686 833.64451 496.15614 488.28044
Gene:68366 1415715_at 111.67122 136.41621 106.36823 97.32068 230.08369 106.08777 89.44478 117.2377 85.95386 90.70844 156.83808
Gene:100043813 1415716_a_at 14764.24777 6963.62989 12406.41792 14037.74669 11677.43328 31383.69773 11159.83905 21330.84418 33464.74972 16158.09343 11666.61937
Gene:57294 1415716_a_at 14764.24777 6963.62989 12406.41792 14037.74669 11677.43328 31383.69773 11159.83905 21330.84418 33464.74972 16158.09343 11666.61937
Gene:66743 1415717_at 723.9914 447.09647 869.07908 701.75519 274.54934 545.14057 829.16265 563.73391 631.17457 663.90093 675.92522
Gene:50724 1415718_at 299.85293 278.1995 388.73574 371.14719 1418.38678 317.60682 280.35413 374.49312 428.25204 341.61954 794.29638
Gene:74252 1415719_s_at 727.82924 628.82479 979.30158 949.72579 667.25851 1229.40331 617.3586 451.13742 1118.35264 759.60262 822.00928
Gene:66591 1415720_s_at 46.42269 31.45824 38.15671 38.52727 122.2585 50.14797 30.97887 33.31102 30.6046 28.79807 30.57495
Gene:74763 1415721_a_at 483.02667 600.64174 549.81964 497.35419 356.44763 610.15294 374.5898 440.33666 717.59496 645.70475 540.0676
Gene:66201 1415722_a_at 695.82244 526.69679 514.81504 460.11037 717.42928 898.03524 649.37086 689.59915 890.39643 642.89455 832.56925
Gene:217869 1415723_at 2320.44264 3182.41602 2280.04092 2248.34121 2780.1736 2449.19473 2069.87183 3175.26907 2380.5865 2282.66261 3290.35903
Gene:12540 1415724_a_at 1710.54049 2411.27333 1784.92513 1586.20116 2274.63403 2499.87604 2238.84302 2493.21434 1782.90245 2173.74016 3070.5791
Gene:106298 1415725_at 247.19799 204.55314 249.09944 242.15514 575.15338 370.90229 240.55778 356.24024 308.13972 253.45979 275.74917
Gene:81702 1415726_at 1119.22685 884.22781 1267.30462 1214.92805 1014.56965 1546.03365 971.08116 1373.63141 1403.6428 877.5386 1305.93468
Gene:246703 1415727_at 1257.74046 1118.1934 862.3407 929.61655 1740.38393 1121.28438 1198.52599 1688.95411 1397.57492 1047.12654 1675.98083
Gene:54196 1415728_at 307.89504 194.68329 188.47349 340.14567 58.19765 265.30279 255.48429 165.7321 257.00145 613.58598 300.86265
Gene:18607 1415729_at 1493.11752 1013.6725 1326.15084 1579.831 1376.17602 3011.38337 1283.86744 1230.25504 1827.10014 881.1944 746.19867
Gene:269061 1415730_at 852.37213 1325.69351 1050.65342 809.45427 569.88429 899.10426 765.58984 1218.99748 1191.12385 1201.53397 758.06568
Gene:52477 1415731_at 100.62831 59.66448 74.31655 100.29543 37.62505 189.96381 64.80476 52.41039 123.03981 138.39212 71.8603
Gene:193742 1415732_at 271.58657 1341.10389 283.92539 307.96724 412.1241 224.45057 258.70773 291.19457 292.7105 415.709 475.78098
Gene:68512 1415733_a_at 738.67529 469.67303 681.15229 677.17055 1635.20109 877.92936 625.52427 742.4588 599.59153 594.88754 881.78539
Gene:19349 1415734_at 4059.05048 4147.40885 4754.23406 4211.62752 4881.52502 3980.05154 3925.27316 3943.73617 3923.81765 4748.54705 4006.89391
Gene:13194 1415735_at 916.46832 1075.17033 888.05046 833.31888 1182.65424 612.75019 1117.04223 993.37118 884.20127 948.5885 941.39448
Gene:56612 1415736_at 5180.87058 2968.79151 4630.41204 4362.35305 3054.95189 5774.27778 5065.99751 5639.75068 4702.54108 3815.8848 3501.8371
Gene:54391 1415737_at 534.71234 675.18937 571.98892 591.26769 1269.5809 602.32597 662.34521 1001.85228 564.32178 638.50494 1167.62797
Gene:66073 1415738_at 352.89571 469.78937 261.61432 264.50198 257.3935 415.45238 282.01404 481.20633 292.10568 256.9772 438.73976
Gene:68035 1415739_at 682.91967 889.19693 854.26882 826.90467 1006.24115 640.06591 675.86686 749.39153 1139.03201 1268.94122 883.4863
Gene:19184 1415740_at 3193.50779 3709.74094 3420.62234 3263.97357 4248.18668 2448.06319 3305.21096 3857.36589 2539.8553 2418.42833 6839.59085
Gene:21982 1415741_at 760.00651 585.65909 675.20477 743.48737 1024.99239 1037.91871 681.3281 773.33588 722.76872 613.44688 746.17686
Gene:11993 1415742_at 216.66874 349.77632 265.32679 284.66431 290.14981 189.96746 256.7969 259.61157 307.07171 275.46861 280.59565
Gene:15184 1415743_at 364.84507 503.4971 607.12555 566.24503 99.6962 273.26883 421.77626 373.58649 628.90834 1561.91452 593.01348
Gene:14976 1415744_at 1483.00048 1150.85671 1129.95174 980.66556 1343.61676 1132.42515 1124.95075 1283.38279 1069.99059 962.09039 1050.15262
Gene:13185 1415745_a_at 311.00367 256.12938 187.86606 262.04672 388.52805 218.94748 267.47371 379.17951 142.33957 211.69401 597.74198
Gene:71722 1415746_at 266.62104 457.09127 346.20414 366.91435 303.40815 188.07778 271.4923 248.07522 331.22141 786.39666 416.66761
Gene:66878 1415747_s_at 876.5755 1144.87256 798.8798 811.12036 939.28239 1089.23048 712.9075 831.78829 943.56453 530.15363 549.63025
Gene:59288 1415748_a_at 1037.43867 484.89238 682.26169 711.49225 1722.24435 831.11178 941.56865 935.04225 813.36121 524.49925 878.94081
Gene:54170 1415749_a_at 1269.46598 926.90662 944.52607 1072.5931 2213.3955 1659.72009 982.38997 1501.53001 1177.08452 1061.88006 1251.4384
Gene:213773 1415750_at 71.06696 48.68763 72.04433 63.35604 85.29013 48.46154 75.46197 53.98362 68.71074 73.41575 93.81838
Gene:15441 1415751_at 2594.44564 2386.68904 2480.49118 2249.86831 1563.05248 2607.26315 2508.82665 2851.85403 3431.06611 2768.13939 1947.25977
Gene:407819 1415752_at 3093.62603 3073.1805 2894.39367 2953.19551 3525.35671 3748.41113 2900.80171 3140.83418 2387.04195 3202.13108 2788.91369
Gene:216169 1415753_at 1799.46186 1868.97564 3434.81096 3028.58869 1972.7138 1592.57342 2163.46088 1159.11442 2524.70489 2242.60487 3293.28727
Gene:69833 1415754_at 917.92489 574.80938 801.27975 657.0879 734.19372 1105.29269 741.70737 1066.56992 1296.6675 946.56432 838.94686
Gene:66589 1415755_a_at 1445.13066 1155.23982 1609.0572 1486.3085 1279.21097 934.23595 1304.89127 1274.35061 1533.7045 1933.20047 1728.88692
Gene:20615 1415756_a_at 470.30734 474.81193 446.79332 482.87375 1239.14761 750.44781 596.00771 634.64951 584.35051 616.30562 1278.4282
Gene:107338 1415757_at 219.97853 374.35179 346.48963 260.79519 690.31193 145.79263 275.43111 436.01769 429.16199 602.9513 830.45059
* Row count is limited to 100.