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データセットの情報

Mammalian PromoterCAD template files for adding regulatory motif data

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These template files are useful if you would like to add new data to PromoterCAD, such as for a new organisms, experimental measurements, or motif identification methods.

Tutorial Page:
Advanced Tutorial 2B: add a new motif database to PromoterCAD
Mammalian PromoterCAD:
http://promotercad.org/mammal
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#LINK
#lang en
#attribution_name GenoCon
#attribution_url http://promotercad.org
#license http://creativecommons.org/licenses/by/3.0/deed.en
#file_name MammalianPromoterCAD_GeneAtlas_Reproductive_organ_Template
#download_from http://linkdata.org/work/rdf1s1067i
#namespace Gene http://www.ncbi.nlm.nih.gov/gene/
#property motif motif name motif sequence motif position Probe ID label:bladder label:ovary label:placenta label:prostate label:testis label:umbilical_cord label:uterus
#object_type_xsd string string string float string float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
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Gene:57437 1415672_at 3685.93941 5079.41876 5583.20898 2487.27402 1347.32249 4992.93106 3628.28884
Gene:100678 1415673_at 89.94449 236.73999 961.91642 145.01751 277.74459 204.16932 108.73751
Gene:60409 1415674_a_at 524.97719 583.41281 871.13743 780.07338 659.10427 668.0762 463.76498
Gene:13481 1415675_at 308.39167 379.72332 765.34064 470.99476 307.56568 478.23403 450.1689
Gene:19173 1415676_a_at 1736.48244 2611.73505 2955.393 2409.69744 1637.06635 1962.16184 3673.52036
Gene:52585 1415677_at 440.36763 454.47946 517.71883 1070.54656 2919.25163 531.28904 551.54276
Gene:19042 1415678_at 1703.33407 1030.35583 824.96458 1560.34082 1886.19956 996.49054 887.57928
Gene:66340 1415679_at 3319.24456 2972.30693 2803.47543 4660.7018 2923.06347 2944.68167 3461.42388
Gene:17222 1415680_at 420.14854 540.14683 758.42434 360.43566 309.07456 696.28085 560.76606
Gene:94067 1415681_at 512.69867 611.37909 939.22492 850.78469 661.67822 508.08275 698.21878
Gene:65246 1415682_at 173.78534 294.54516 293.31845 209.78505 138.47083 204.83465 257.06205
Gene:18107 1415683_at 1734.80029 1544.71167 2565.40455 1914.06859 2851.2301 1053.76051 1768.21501
Gene:11793 1415684_at 304.60025 464.52717 345.19595 1173.258 45.98237 205.11343 431.87214
Gene:76784 1415685_at 431.73595 361.08853 238.09747 442.19955 287.07771 267.20688 281.54774
Gene:68365 1415686_at 1250.08688 1353.41035 886.81498 1551.67885 262.05796 903.53188 1266.80445
Gene:19156 1415687_a_at 13550.70422 18472.78686 22734.1261 12098.99429 1963.10408 10328.98347 16752.55285
Gene:67128 1415688_at 1649.21567 1337.14252 935.30915 2045.03736 214.62765 1364.08986 1254.57559
Gene:72739 1415689_s_at 577.33072 810.32793 290.46399 399.51449 153.56693 546.41316 834.02844
Gene:94064 1415690_at 1610.22183 2005.26671 1415.17364 2212.40132 407.96685 1500.9191 1974.65267
Gene:13383 1415691_at 2116.75706 974.47889 909.07041 2357.14904 107.62599 2111.04141 1416.79396
Gene:12330 1415692_s_at 8645.49893 9023.92267 12795.93092 13724.68122 1866.53652 8004.30417 7678.81381
Gene:67819 1415693_at 368.52326 382.26974 532.12037 550.24896 71.01461 285.29263 284.2716
Gene:22375 1415694_at 102.28589 97.95178 137.88442 1139.67884 56.14311 24.80636 201.39848
Gene:26440 1415695_at 4642.21619 6278.12013 4546.65524 4926.52936 1009.36683 4817.67508 4686.33876
Gene:20224 1415696_at 1541.42916 1472.37183 1615.19215 2524.81888 111.46536 2719.00916 1565.45554
Gene:23881 1415697_at 497.39072 443.09827 356.62745 949.2801 273.575 432.31575 508.16483
Gene:105348 1415698_at 162.55416 231.13187 1915.89352 135.15111 27.16769 458.2906 1654.72404
Gene:209318 1415699_a_at 862.8769 1461.45007 844.43129 1852.45681 2717.6191 714.12227 1145.62144
Gene:67437 1415700_a_at 4895.99896 6958.22169 6208.55331 8979.70163 457.12847 8357.86944 5717.72122
Gene:65019 1415701_x_at 44903.95703 49848.96163 26753.42555 47364.74781 15238.72803 45727.73258 50049.47419
Gene:13016 1415702_a_at 2374.29742 2559.14048 1029.24747 2482.32747 248.77636 1809.7528 2801.39281
Gene:59026 1415703_at 1486.50979 1990.65637 1081.16175 1814.26568 354.91067 948.98457 2215.62272
Gene:321022 1415704_a_at 1460.21092 3203.74646 2463.88799 4441.61925 1076.77835 2364.63318 2572.54416
Gene:66818 1415705_at 606.56938 565.9827 514.71813 729.0185 135.18802 728.87748 500.72551
Gene:12847 1415706_at 4955.16543 4916.71775 4768.19052 6910.01735 1361.89172 6254.70533 5325.5556
Gene:99152 1415707_at 919.61082 907.11484 1101.11003 1008.16104 312.17173 1417.70543 1252.3197
Gene:544752 1415708_at 1454.72937 2765.80537 2140.27546 2219.30349 1027.57985 2838.38606 3291.18103
Gene:107338 1415709_s_at 309.40491 166.73264 170.6135 621.89156 788.11028 180.69395 241.96407
Gene:231430 1415710_at 227.70997 283.17512 245.00869 345.00418 245.8199 157.76892 260.24175
Gene:211673 1415711_at 1412.05561 1110.18144 1862.23244 2606.99451 596.65896 902.5295 1600.69017
Gene:360216 1415712_at 357.5378 575.67971 194.02126 315.47557 1309.92673 312.49799 464.78203
Gene:27225 1415713_a_at 405.34631 400.11653 347.04714 388.24265 681.03228 208.46324 629.45196
Gene:66618 1415714_a_at 983.34758 1005.67103 621.15527 808.83863 707.56179 698.17365 724.73294
Gene:68366 1415715_at 152.61743 106.1664 257.32808 188.48454 243.30085 128.26843 103.45193
Gene:100043813 1415716_a_at 39190.51928 41405.90199 16897.02307 8666.06689 13866.54449 34079.52347 41731.4786
Gene:57294 1415716_a_at 39190.51928 41405.90199 16897.02307 8666.06689 13866.54449 34079.52347 41731.4786
Gene:66743 1415717_at 175.18208 291.14059 212.34876 232.66057 745.37913 154.66017 291.13707
Gene:50724 1415718_at 327.52207 596.62834 456.6725 666.88639 50.86707 279.06246 457.98587
Gene:74252 1415719_s_at 412.87702 390.4266 176.07325 295.36756 60.50416 231.26793 334.05573
Gene:66591 1415720_s_at 53.40611 52.12102 126.19991 60.84323 138.83127 96.47422 104.5592
Gene:74763 1415721_a_at 194.50736 219.41102 141.22436 409.00552 44.54848 138.2986 243.24283
Gene:66201 1415722_a_at 516.97014 515.13388 850.87418 567.2151 124.84334 426.52239 539.92897
Gene:217869 1415723_at 2828.2607 3447.6911 2227.31662 3867.71769 3808.49116 2148.57122 3004.40318
Gene:12540 1415724_a_at 5577.01384 6018.33595 5336.91759 2967.37238 627.62944 7971.33618 7120.55967
Gene:106298 1415725_at 263.50541 255.15955 200.77613 295.43255 120.46929 219.16804 210.01509
Gene:81702 1415726_at 620.27114 935.35523 2546.29116 1156.27756 325.45272 911.96874 1009.23213
Gene:246703 1415727_at 1200.2431 1748.74837 1176.96765 2981.36343 981.44563 1035.3265 1433.1465
Gene:54196 1415728_at 94.08583 594.85523 366.20924 557.39966 393.75044 246.64002 569.24528
Gene:18607 1415729_at 764.03243 366.87782 1072.18394 787.70342 296.84572 975.60834 372.56305
Gene:269061 1415730_at 742.12437 878.84208 430.93352 504.65882 395.76704 600.05341 1023.8008
Gene:52477 1415731_at 74.99707 112.72593 71.77689 164.89614 155.23814 84.50165 101.61524
Gene:193742 1415732_at 231.29476 253.43848 378.18609 756.59175 1015.81724 131.21143 362.62119
Gene:68512 1415733_a_at 751.52719 922.15113 1585.848 770.58451 96.58385 1278.64002 1195.73982
Gene:19349 1415734_at 5032.01583 2758.48111 2683.17536 4339.78665 282.9357 2300.57287 4039.6911
Gene:13194 1415735_at 1787.68724 2258.66413 5688.38916 2889.53629 1780.65661 3384.40948 2556.21967
Gene:56612 1415736_at 7776.34738 5807.1361 2306.59697 8083.56881 6173.03641 4183.2497 5297.45496
Gene:54391 1415737_at 881.87079 831.79483 1682.18936 772.47327 72.65 454.99028 757.13727
Gene:66073 1415738_at 404.15375 632.64238 2053.43124 343.44641 627.86464 850.79679 718.58643
Gene:68035 1415739_at 891.02665 1018.06808 534.88303 1133.73462 732.84836 454.6601 1081.84872
Gene:19184 1415740_at 1675.55046 1707.91492 1100.45701 2247.89243 2002.16288 1679.8741 1896.46105
Gene:21982 1415741_at 1709.51994 2159.57368 4691.13545 2430.6378 449.89293 3307.61287 3407.05579
Gene:11993 1415742_at 438.31791 478.99823 370.19309 874.47878 576.69557 226.10054 622.89209
Gene:15184 1415743_at 177.66714 185.03918 90.3615 112.81755 284.02183 105.61167 304.6398
Gene:14976 1415744_at 769.17895 948.54988 992.90558 627.26375 1508.46798 934.71122 940.97808
Gene:13185 1415745_a_at 512.26424 301.10409 1147.87924 270.48532 150.86289 391.51952 359.70414
Gene:71722 1415746_at 177.88731 329.47257 86.6952 193.53299 246.86291 184.23156 418.75193
Gene:66878 1415747_s_at 1734.90073 1162.29274 1532.99053 2114.77548 233.01693 1994.8069 1004.85528
Gene:59288 1415748_a_at 530.52838 453.09858 634.80105 556.4049 404.28 637.84758 640.49859
Gene:54170 1415749_a_at 1480.34806 1464.94749 2012.0908 1311.85652 668.1152 1434.86775 1369.22115
Gene:213773 1415750_at 56.08894 85.87347 42.28516 105.61822 316.09447 39.39263 101.0356
Gene:15441 1415751_at 2547.46734 3180.15011 1514.86281 2396.95774 287.10152 1944.47016 2722.34864
Gene:407819 1415752_at 1758.22851 1835.44363 2092.42814 3201.00526 646.44951 1484.28744 1339.82427
Gene:216169 1415753_at 643.88003 1502.86009 716.2285 1134.29164 4161.71193 594.46399 1038.36349
Gene:69833 1415754_at 1414.7295 1400.15115 1750.22995 1269.80079 623.60387 1812.47096 1769.39303
Gene:66589 1415755_a_at 1128.27867 931.95587 679.87971 832.94304 495.34039 697.17045 1149.08194
Gene:20615 1415756_a_at 855.29056 1121.46086 752.02259 908.75248 811.45325 570.20692 782.37258
Gene:107338 1415757_at 368.22288 286.86535 141.03348 1253.22585 2211.14632 125.03604 381.64591
* Row count is limited to 100.