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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
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#LINK
#lang en
#attribution_name Koro NISHIKATA
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PPDB_COL_LDHH
#download_from http://linkdata.org/work/rdf1s289i
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s219i/Octamer_elements.html#
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp TAIR gene chromosome position start position start from TSS peak position end position end from TSS peak strand sequence TSS peak position TSS peak position from Initiation codon Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd string:en string:en string:en float string:en string:en string:en integer integer integer integer string:en string:en integer integer string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 TAIR:At1g01010 Chr1 3455 | 3456 -213 | -212 3462 | 3463 -206 | -205 + 3668 -92 3760 261585_at Diurnal_Condition:COL_LDHH 20 0.679210 9.821790 6.419780 7.227200 5.807330 9.147150 6.811280 10.262200 6.855390 7.474120 5.437970 9.719590 6.501230 15.717627 0.539121
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 TAIR:At1g01010 Chr1 3535 | 3536 | 3537 -133 | -132 | -131 3542 | 3543 | 3544 -126 | -125 | -124 + 3668 -92 3760 261585_at Diurnal_Condition:COL_LDHH 20 0.679210 9.821790 6.419780 7.227200 5.807330 9.147150 6.811280 10.262200 6.855390 7.474120 5.437970 9.719590 6.501230 15.717627 0.539121
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 TAIR:At1g01010 Chr1 3601 -67 3608 -60 + 3668 -92 3760 261585_at Diurnal_Condition:COL_LDHH 20 0.679210 9.821790 6.419780 7.227200 5.807330 9.147150 6.811280 10.262200 6.855390 7.474120 5.437970 9.719590 6.501230 15.717627 0.539121
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 TAIR:At1g01060 Chr1 37913 134 37906 127 - 37779 718 37061 261569_at Diurnal_Condition:COL_LDHH 0 0.992101 2365.880000 254.607000 5.411850 6.313510 5.597350 238.476000 2317.800000 230.181000 5.410650 5.995790 5.466460 239.345000 18.004327 428.477945
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 TAIR:At1g01060 Chr1 37950 | 37951 | 37952 | 37953 171 | 172 | 173 | 174 37943 | 37944 | 37945 | 37946 164 | 165 | 166 | 167 - 37779 718 37061 261569_at Diurnal_Condition:COL_LDHH 0 0.992101 2365.880000 254.607000 5.411850 6.313510 5.597350 238.476000 2317.800000 230.181000 5.410650 5.995790 5.466460 239.345000 18.004327 428.477945
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 TAIR:At1g01070 Chr1 40933 72 40926 65 - 40861 264 40597 261576_at Diurnal_Condition:COL_LDHH 21 0.968451 31.088600 25.122500 7.622910 18.684000 24.677000 39.047300 29.166800 24.211200 7.366660 17.938400 26.029800 39.300500 14.950536 6.522696
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 TAIR:At1g01080 Chr1 46877 | 46878 | 46879 | 46880 | 46881 47 | 48 | 49 | 50 | 51 46870 | 46871 | 46872 | 46873 | 46874 40 | 41 | 42 | 43 | 44 - 46830 41 46789 261577_at Diurnal_Condition:COL_LDHH 14 0.886510 200.896000 171.189000 147.380000 259.428000 284.702000 213.399000 210.301000 172.523000 151.164000 261.698000 297.045000 206.965000 10.111113 29.504941
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 TAIR:At1g01080 Chr1 46978 | 46979 | 46980 | 46981 | 46982 148 | 149 | 150 | 151 | 152 46971 | 46972 | 46973 | 46974 | 46975 141 | 142 | 143 | 144 | 145 - 46830 41 46789 261577_at Diurnal_Condition:COL_LDHH 14 0.886510 200.896000 171.189000 147.380000 259.428000 284.702000 213.399000 210.301000 172.523000 151.164000 261.698000 297.045000 206.965000 10.111113 29.504941
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 TAIR:At1g01080 Chr1 47119 | 47120 | 47121 | 47122 289 | 290 | 291 | 292 47112 | 47113 | 47114 | 47115 282 | 283 | 284 | 285 - 46830 41 46789 261577_at Diurnal_Condition:COL_LDHH 14 0.886510 200.896000 171.189000 147.380000 259.428000 284.702000 213.399000 210.301000 172.523000 151.164000 261.698000 297.045000 206.965000 10.111113 29.504941
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 TAIR:At1g01090 Chr1 49365 94 49358 87 - 49271 105 49166 261583_at Diurnal_Condition:COL_LDHH 21 0.919473 2791.550000 1968.440000 1394.630000 2039.240000 2310.120000 2485.890000 2773.230000 2026.850000 1524.090000 1840.060000 2388.230000 2469.610000 14.983484 278.432440
Gene:AT2G26530 OctamerElement:AtREG473 | OctamerElement:AtREG652 REG CGGTTTAA | ACGGTTTA 77.5 | 78.5 TAIR9 TAIR:At2g26530 Chr2 11284099 | 11284100 81 | 82 11284092 | 11284093 74 | 75 - 11284018 29 11283989 245041_at Diurnal_Condition:COL_LDHH 16 0.929266 8.967260 5.242190 6.003050 11.851900 16.913800 10.431800 9.758070 5.631530 6.542940 10.823900 15.499600 9.696500 10.438046 2.290551
Gene:AT2G26530 OctamerElement:AtREG571 | OctamerElement:AtREG581 | OctamerElement:AtREG372 | OctamerElement:AtREG386 REG TGGGCTAA | ATGGGCTA | AATGGGCT | AAATGGGC 251.5 | 252.5 | 253.5 | 254.5 TAIR9 TAIR:At2g26530 Chr2 11284273 | 11284274 | 11284275 | 11284276 255 | 256 | 257 | 258 11284266 | 11284267 | 11284268 | 11284269 248 | 249 | 250 | 251 - 11284018 29 11283989 245041_at Diurnal_Condition:COL_LDHH 16 0.929266 8.967260 5.242190 6.003050 11.851900 16.913800 10.431800 9.758070 5.631530 6.542940 10.823900 15.499600 9.696500 10.438046 2.290551
Gene:AT2G26570 OctamerElement:AtREG494 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 REG CCGGGTCG | CGGGTCGG | GGGTCGGG | GGTCGGGT 273.5 | 272.5 | 271.5 | 270.5 TAIR9 TAIR:At2g26570 Chr2 11298756 | 11298757 | 11298758 | 11298759 -277 | -276 | -275 | -274 11298763 | 11298764 | 11298765 | 11298766 -270 | -269 | -268 | -267 + 11299033 -532 11299565 245028_at Diurnal_Condition:COL_LDHH 20 0.817279 114.000000 118.847000 88.100400 119.296000 114.550000 99.435000 102.707000 116.464000 79.500400 129.018000 113.298000 105.822000 1.272396 2.305756
Gene:AT2G26570 OctamerElement:AtREG513 REG ACGTGGAC 134.5 TAIR9 TAIR:At2g26570 Chr2 11298895 -138 11298902 -131 + 11299033 -532 11299565 245028_at Diurnal_Condition:COL_LDHH 20 0.817279 114.000000 118.847000 88.100400 119.296000 114.550000 99.435000 102.707000 116.464000 79.500400 129.018000 113.298000 105.822000 1.272396 2.305756
Gene:AT2G26590 OctamerElement:AtREG525 | OctamerElement:AtREG407 | OctamerElement:AtREG402 REG TGGGCTTG | TTGGGCTT | ATTGGGCT 107.5 | 108.5 | 109.5 TAIR9 TAIR:At2g26590 Chr2 11315188 | 11315189 | 11315190 111 | 112 | 113 11315181 | 11315182 | 11315183 104 | 105 | 106 - 11315077 360 11314717 245045_at Diurnal_Condition:COL_LDHH 19 0.941378 146.364000 125.042000 106.378000 149.161000 165.211000 191.444000 153.973000 120.448000 100.260000 163.744000 157.478000 196.553000 23.332849 18.948098
Gene:AT2G26590 OctamerElement:AtREG549 REG TAAAAGCC 135.5 TAIR9 TAIR:At2g26590 Chr2 11315216 139 11315209 132 - 11315077 360 11314717 245045_at Diurnal_Condition:COL_LDHH 19 0.941378 146.364000 125.042000 106.378000 149.161000 165.211000 191.444000 153.973000 120.448000 100.260000 163.744000 157.478000 196.553000 23.332849 18.948098
Gene:AT2G26590 OctamerElement:AtREG578 | OctamerElement:AtREG483 | OctamerElement:AtREG606 REG ACGTCATC | CACGTCAT | TGTCACGT 271.5 | 272.5 | 275.5 TAIR9 TAIR:At2g26590 Chr2 11315352 | 11315353 | 11315356 275 | 276 | 279 11315345 | 11315346 | 11315349 268 | 269 | 272 - 11315077 360 11314717 245045_at Diurnal_Condition:COL_LDHH 19 0.941378 146.364000 125.042000 106.378000 149.161000 165.211000 191.444000 153.973000 120.448000 100.260000 163.744000 157.478000 196.553000 23.332849 18.948098
Gene:AT1G01050 At180 | At207 | At261 | At290 TATA TATATACA | ATATATAC | CATATATA | TCATATAT 26.5 | 27.5 | 28.5 | 29.5 TAIR9 TAIR:At1g01050 Chr1 33147 | 33148 | 33149 | 33150 30 | 31 | 32 | 33 33140 | 33141 | 33142 | 33143 23 | 24 | 25 | 26 - 33117 447 32670 261579_at Diurnal_Condition:COL_LDHH 19 0.992415 1102.340000 779.917000 619.206000 938.200000 1143.050000 1298.090000 1047.550000 784.906000 618.378000 922.992000 1248.500000 1336.120000 13.106005 167.426298
Gene:AT1G01070 At153 TATA ATATAGAG 26.5 TAIR9 TAIR:At1g01070 Chr1 40891 30 40884 23 - 40861 264 40597 261576_at Diurnal_Condition:COL_LDHH 21 0.968451 31.088600 25.122500 7.622910 18.684000 24.677000 39.047300 29.166800 24.211200 7.366660 17.938400 26.029800 39.300500 14.950536 6.522696
Gene:AT2G26560 At227 | At231 | At281 | At304 TATA TATAAATA | CTATAAAT | CCTATAAA | TCCTATAA 27.5 | 28.5 | 29.5 | 30.5 TAIR9 TAIR:At2g26560 Chr2 11295837 | 11295838 | 11295839 | 11295840 31 | 32 | 33 | 34 11295830 | 11295831 | 11295832 | 11295833 24 | 25 | 26 | 27 - 11295806 98 11295708 245038_at Diurnal_Condition:COL_LDHH 16 0.848409 5.075250 4.406430 5.103430 4.676740 6.121320 4.555300 5.286960 4.370130 5.555090 4.739550 6.620270 4.814160 9.602814 0.238584
Gene:AT1G01010 At708 | At121 | At050 Y CTTCCTCC | CCTCCCTC | CTCCCTCC 45.5 | 42.5 | 41.5 TAIR9 TAIR:At1g01010 Chr1 3619 | 3622 | 3623 -49 | -46 | -45 3626 | 3629 | 3630 -42 | -39 | -38 + 3668 -92 3760 261585_at Diurnal_Condition:COL_LDHH 20 0.679210 9.821790 6.419780 7.227200 5.807330 9.147150 6.811280 10.262200 6.855390 7.474120 5.437970 9.719590 6.501230 15.717627 0.539121
Gene:AT1G01050 At033 | At026 | At006 Y TCTCTCCC | TTCTCTCC | TTTCTCTC 20.5 | 19.5 | 18.5 TAIR9 TAIR:At1g01050 Chr1 33100 | 33101 | 33102 -17 | -16 | -15 33093 | 33094 | 33095 -24 | -23 | -22 - 33117 447 32670 261579_at Diurnal_Condition:COL_LDHH 19 0.992415 1102.340000 779.917000 619.206000 938.200000 1143.050000 1298.090000 1047.550000 784.906000 618.378000 922.992000 1248.500000 1336.120000 13.106005 167.426298
Gene:AT1G01060 At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At066 | At713 | At085 | At088 | At715 Y TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | CCTTCTTC | TCCTTCTT | TTCCTTCT | CTTCCTTC | TCTTCCTT 39.5 | 38.5 | 37.5 | 36.5 | 35.5 | 34.5 | 33.5 | 32.5 | 31.5 | 30.5 | 29.5 | 28.5 | 27.5 | 26.5 | 25.5 | 24.5 | 23.5 | 22.5 | 21.5 | 20.5 | 19.5 | 18.5 | 17.5 | 16.5 | 15.5 | 14.5 | 13.5 | 12.5 | 11.5 | 10.5 | 9.5 | 8.5 | 7.5 | 6.5 | 5.5 TAIR9 TAIR:At1g01060 Chr1 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 | 37771 | 37772 | 37773 | 37774 | 37775 | 37776 | 37777 -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 | -8 | -7 | -6 | -5 | -4 | -3 | -2 37736 | 37737 | 37738 | 37739 | 37740 | 37741 | 37742 | 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 -43 | -42 | -41 | -40 | -39 | -38 | -37 | -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 - 37779 718 37061 261569_at Diurnal_Condition:COL_LDHH 0 0.992101 2365.880000 254.607000 5.411850 6.313510 5.597350 238.476000 2317.800000 230.181000 5.410650 5.995790 5.466460 239.345000 18.004327 428.477945
Gene:AT1G01060 At063 Y TCTTCTTC 14.5 TAIR9 TAIR:At1g01060 Chr1 37797 18 37790 11 - 37779 718 37061 261569_at Diurnal_Condition:COL_LDHH 0 0.992101 2365.880000 254.607000 5.411850 6.313510 5.597350 238.476000 2317.800000 230.181000 5.410650 5.995790 5.466460 239.345000 18.004327 428.477945
Gene:AT1G01060 At042 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At075 | At083 | At040 | At009 Y CTTCTTCC | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | CTCTTCTT | TCTCTTCT | TTCTCTTC | CTTCTCTT 24.5 | 25.5 | 26.5 | 27.5 | 28.5 | 29.5 | 30.5 | 31.5 | 32.5 | 33.5 | 34.5 | 35.5 TAIR9 TAIR:At1g01060 Chr1 37807 | 37808 | 37809 | 37810 | 37811 | 37812 | 37813 | 37814 | 37815 | 37816 | 37817 | 37818 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 37800 | 37801 | 37802 | 37803 | 37804 | 37805 | 37806 | 37807 | 37808 | 37809 | 37810 | 37811 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 - 37779 718 37061 261569_at Diurnal_Condition:COL_LDHH 0 0.992101 2365.880000 254.607000 5.411850 6.313510 5.597350 238.476000 2317.800000 230.181000 5.410650 5.995790 5.466460 239.345000 18.004327 428.477945
Gene:AT1G01080 At005 Y TTCTTCTC 8.5 TAIR9 TAIR:At1g01080 Chr1 46825 -5 46818 -12 - 46830 41 46789 261577_at Diurnal_Condition:COL_LDHH 14 0.886510 200.896000 171.189000 147.380000 259.428000 284.702000 213.399000 210.301000 172.523000 151.164000 261.698000 297.045000 206.965000 10.111113 29.504941
Gene:AT1G01090 At090 Y CTCTCTTT 29.5 TAIR9 TAIR:At1g01090 Chr1 49245 -26 49238 -33 - 49271 105 49166 261583_at Diurnal_Condition:COL_LDHH 21 0.919473 2791.550000 1968.440000 1394.630000 2039.240000 2310.120000 2485.890000 2773.230000 2026.850000 1524.090000 1840.060000 2388.230000 2469.610000 14.983484 278.432440
Gene:AT1G01090 At026 Y TTCTCTCC 10.5 TAIR9 TAIR:At1g01090 Chr1 49264 -7 49257 -14 - 49271 105 49166 261583_at Diurnal_Condition:COL_LDHH 21 0.919473 2791.550000 1968.440000 1394.630000 2039.240000 2310.120000 2485.890000 2773.230000 2026.850000 1524.090000 1840.060000 2388.230000 2469.610000 14.983484 278.432440
Gene:AT1G01090 At114 Y CCTCCTCT 12.5 TAIR9 TAIR:At1g01090 Chr1 49287 16 49280 9 - 49271 105 49166 261583_at Diurnal_Condition:COL_LDHH 21 0.919473 2791.550000 1968.440000 1394.630000 2039.240000 2310.120000 2485.890000 2773.230000 2026.850000 1524.090000 1840.060000 2388.230000 2469.610000 14.983484 278.432440
Gene:AT2G26500 At710 | At348 | At712 | At701 Y TCCTCCTT | CCTCCTTC | TCCTTCCT | CCTTCCTT 45.5 | 44.5 | 42.5 | 41.5 TAIR9 TAIR:At2g26500 Chr2 11270177 | 11270178 | 11270180 | 11270181 -49 | -48 | -46 | -45 11270184 | 11270185 | 11270187 | 11270188 -42 | -41 | -39 | -38 + 11270226 -144 11270370 245044_at Diurnal_Condition:COL_LDHH 18 0.827587 6489.440000 6273.760000 7137.650000 6786.710000 7926.200000 7704.840000 6734.490000 6384.260000 7325.950000 7235.320000 7646.410000 7825.090000 1.769621 321.151025
Gene:AT2G26500 At004 | At009 | At040 | At083 | At075 Y TCTTCTCT | CTTCTCTT | TTCTCTTC | TCTCTTCT | CTCTTCTT 25.5 | 24.5 | 23.5 | 22.5 | 21.5 TAIR9 TAIR:At2g26500 Chr2 11270197 | 11270198 | 11270199 | 11270200 | 11270201 -29 | -28 | -27 | -26 | -25 11270204 | 11270205 | 11270206 | 11270207 | 11270208 -22 | -21 | -20 | -19 | -18 + 11270226 -144 11270370 245044_at Diurnal_Condition:COL_LDHH 18 0.827587 6489.440000 6273.760000 7137.650000 6786.710000 7926.200000 7704.840000 6734.490000 6384.260000 7325.950000 7235.320000 7646.410000 7825.090000 1.769621 321.151025
Gene:AT2G26500 At020 | At717 | At060 Y CTTCTCCT | TTCTCCTT | CTCCTTTC 10.5 | 9.5 | 7.5 TAIR9 TAIR:At2g26500 Chr2 11270212 | 11270213 | 11270215 -14 | -13 | -11 11270219 | 11270220 | 11270222 -7 | -6 | -4 + 11270226 -144 11270370 245044_at Diurnal_Condition:COL_LDHH 18 0.827587 6489.440000 6273.760000 7137.650000 6786.710000 7926.200000 7704.840000 6734.490000 6384.260000 7325.950000 7235.320000 7646.410000 7825.090000 1.769621 321.151025
Gene:AT2G26500 At009 Y CTTCTCTT 14.5 TAIR9 TAIR:At2g26500 Chr2 11270237 11 11270244 18 + 11270226 -144 11270370 245044_at Diurnal_Condition:COL_LDHH 18 0.827587 6489.440000 6273.760000 7137.650000 6786.710000 7926.200000 7704.840000 6734.490000 6384.260000 7325.950000 7235.320000 7646.410000 7825.090000 1.769621 321.151025
Gene:AT2G26510 At004 | At009 Y TCTTCTCT | CTTCTCTT 33.5 | 34.5 TAIR9 TAIR:At2g26510 Chr2 11273999 | 11274000 30 | 31 11274006 | 11274007 37 | 38 + 11273969 -149 11274118 245046_at Diurnal_Condition:COL_LDHH 15 0.963962 152.968000 109.508000 192.272000 250.136000 256.798000 233.577000 163.408000 114.319000 177.807000 242.018000 240.162000 240.509000 9.429458 34.806346
Gene:AT2G26530 At005 | At051 | At066 Y TTCTTCTC | CTTCTTCT | CCTTCTTC 19.5 | 20.5 | 21.5 TAIR9 TAIR:At2g26530 Chr2 11284041 | 11284042 | 11284043 23 | 24 | 25 11284034 | 11284035 | 11284036 16 | 17 | 18 - 11284018 29 11283989 245041_at Diurnal_Condition:COL_LDHH 16 0.929266 8.967260 5.242190 6.003050 11.851900 16.913800 10.431800 9.758070 5.631530 6.542940 10.823900 15.499600 9.696500 10.438046 2.290551
Gene:AT2G26580 At705 | At079 | At035 Y CTCTCCTT | CCTCTCCT | TCCTCTCC 41.5 | 40.5 | 39.5 TAIR9 TAIR:At2g26580 Chr2 11306971 | 11306972 | 11306973 -38 | -37 | -36 11306964 | 11306965 | 11306966 -45 | -44 | -43 - 11307009 270 11306739 245029_at Diurnal_Condition:COL_LDHH 11 0.954350 83.502900 109.325000 156.652000 207.553000 134.853000 86.772200 82.073600 98.780300 150.180000 214.188000 145.418000 93.761100 5.499031 29.872949
Gene:AT2G26590 At026 | At006 | At008 | At007 Y TTCTCTCC | TTTCTCTC | CTTTCTCT | TCTTTCTC 19.5 | 18.5 | 17.5 | 16.5 TAIR9 TAIR:At2g26590 Chr2 11315061 | 11315062 | 11315063 | 11315064 -16 | -15 | -14 | -13 11315054 | 11315055 | 11315056 | 11315057 -23 | -22 | -21 | -20 - 11315077 360 11314717 245045_at Diurnal_Condition:COL_LDHH 19 0.941378 146.364000 125.042000 106.378000 149.161000 165.211000 191.444000 153.973000 120.448000 100.260000 163.744000 157.478000 196.553000 23.332849 18.948098
Gene:AT1G01010 At723 | At728 | At722 GA CGAGAGAG | GAGAGAGA | AGAGAGAT 32.5 | 33.5 | 34.5 TAIR9 TAIR:At1g01010 Chr1 3697 | 3698 | 3699 29 | 30 | 31 3704 | 3705 | 3706 36 | 37 | 38 + 3668 -92 3760 261585_at Diurnal_Condition:COL_LDHH 20 0.679210 9.821790 6.419780 7.227200 5.807330 9.147150 6.811280 10.262200 6.855390 7.474120 5.437970 9.719590 6.501230 15.717627 0.539121
Gene:AT1G01070 At730 | At722 | At728 | At721 | At731 GA GAGAGATA | AGAGAGAT | GAGAGAGA | AGAGAGAG | TAGAGAGA 19.5 | 20.5 | 21.5 | 22.5 | 23.5 TAIR9 TAIR:At1g01070 Chr1 40884 | 40885 | 40886 | 40887 | 40888 23 | 24 | 25 | 26 | 27 40877 | 40878 | 40879 | 40880 | 40881 16 | 17 | 18 | 19 | 20 - 40861 264 40597 261576_at Diurnal_Condition:COL_LDHH 21 0.968451 31.088600 25.122500 7.622910 18.684000 24.677000 39.047300 29.166800 24.211200 7.366660 17.938400 26.029800 39.300500 14.950536 6.522696
Gene:AT2G26570 At734 | At721 | At728 | At719 GA AAGAGAGA | AGAGAGAG | GAGAGAGA | AGAGAGAA 11.5 | 10.5 | 9.5 | 8.5 TAIR9 TAIR:At2g26570 Chr2 11299018 | 11299019 | 11299020 | 11299021 -15 | -14 | -13 | -12 11299025 | 11299026 | 11299027 | 11299028 -8 | -7 | -6 | -5 + 11299033 -532 11299565 245028_at Diurnal_Condition:COL_LDHH 20 0.817279 114.000000 118.847000 88.100400 119.296000 114.550000 99.435000 102.707000 116.464000 79.500400 129.018000 113.298000 105.822000 1.272396 2.305756
Gene:AT2G26570 At730 GA GAGAGATA 28.5 TAIR9 TAIR:At2g26570 Chr2 11299058 25 11299065 32 + 11299033 -532 11299565 245028_at Diurnal_Condition:COL_LDHH 20 0.817279 114.000000 118.847000 88.100400 119.296000 114.550000 99.435000 102.707000 116.464000 79.500400 129.018000 113.298000 105.822000 1.272396 2.305756
* Row count is limited to 100.