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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
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#LINK
#lang en
#attribution_name Koro NISHIKATA
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PPDB_DD_DDHC
#download_from http://linkdata.org/work/rdf1s289i
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s219i/Octamer_elements.html#
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp TAIR gene chromosome position start position start from TSS peak position end position end from TSS peak strand sequence TSS peak position TSS peak position from Initiation codon Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd string:en string:en string:en float string:en string:en string:en integer integer integer integer string:en string:en integer integer string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 TAIR:At1g01010 Chr1 3455 | 3456 -213 | -212 3462 | 3463 -206 | -205 + 3668 -92 3760 261585_at Circadian_Condition:DD_DDHC 19 0.597084 7.267360 9.425840 7.421170 8.471690 7.249960 14.457200 11.177600 10.451800 12.391500 13.253200 15.618100 15.322900 23.929013 0.935314
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 TAIR:At1g01010 Chr1 3535 | 3536 | 3537 -133 | -132 | -131 3542 | 3543 | 3544 -126 | -125 | -124 + 3668 -92 3760 261585_at Circadian_Condition:DD_DDHC 19 0.597084 7.267360 9.425840 7.421170 8.471690 7.249960 14.457200 11.177600 10.451800 12.391500 13.253200 15.618100 15.322900 23.929013 0.935314
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 TAIR:At1g01010 Chr1 3601 -67 3608 -60 + 3668 -92 3760 261585_at Circadian_Condition:DD_DDHC 19 0.597084 7.267360 9.425840 7.421170 8.471690 7.249960 14.457200 11.177600 10.451800 12.391500 13.253200 15.618100 15.322900 23.929013 0.935314
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 TAIR:At1g01060 Chr1 37913 134 37906 127 - 37779 718 37061 261569_at Circadian_Condition:DD_DDHC 0 0.933184 310.489000 207.992000 5.148140 3.982130 6.434480 157.119000 371.614000 413.806000 69.798700 12.804200 9.674470 143.560000 19.128643 94.166497
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 TAIR:At1g01060 Chr1 37950 | 37951 | 37952 | 37953 171 | 172 | 173 | 174 37943 | 37944 | 37945 | 37946 164 | 165 | 166 | 167 - 37779 718 37061 261569_at Circadian_Condition:DD_DDHC 0 0.933184 310.489000 207.992000 5.148140 3.982130 6.434480 157.119000 371.614000 413.806000 69.798700 12.804200 9.674470 143.560000 19.128643 94.166497
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 TAIR:At1g01070 Chr1 40933 72 40926 65 - 40861 264 40597 261576_at Circadian_Condition:DD_DDHC 3 0.651118 44.621900 46.187300 16.862500 35.690900 17.007800 26.947800 21.931300 44.203300 32.733600 29.065000 17.282100 37.165700 20.942845 4.309034
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 TAIR:At1g01080 Chr1 46877 | 46878 | 46879 | 46880 | 46881 47 | 48 | 49 | 50 | 51 46870 | 46871 | 46872 | 46873 | 46874 40 | 41 | 42 | 43 | 44 - 46830 41 46789 261577_at Circadian_Condition:DD_DDHC 12 0.545759 107.567000 159.298000 173.358000 184.597000 206.954000 155.523000 115.588000 164.983000 130.624000 91.837200 150.258000 170.998000 8.626915 6.306434
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 TAIR:At1g01080 Chr1 46978 | 46979 | 46980 | 46981 | 46982 148 | 149 | 150 | 151 | 152 46971 | 46972 | 46973 | 46974 | 46975 141 | 142 | 143 | 144 | 145 - 46830 41 46789 261577_at Circadian_Condition:DD_DDHC 12 0.545759 107.567000 159.298000 173.358000 184.597000 206.954000 155.523000 115.588000 164.983000 130.624000 91.837200 150.258000 170.998000 8.626915 6.306434
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 TAIR:At1g01080 Chr1 47119 | 47120 | 47121 | 47122 289 | 290 | 291 | 292 47112 | 47113 | 47114 | 47115 282 | 283 | 284 | 285 - 46830 41 46789 261577_at Circadian_Condition:DD_DDHC 12 0.545759 107.567000 159.298000 173.358000 184.597000 206.954000 155.523000 115.588000 164.983000 130.624000 91.837200 150.258000 170.998000 8.626915 6.306434
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 TAIR:At1g01090 Chr1 49365 94 49358 87 - 49271 105 49166 261583_at Circadian_Condition:DD_DDHC 2 0.731487 1905.980000 2127.740000 1710.560000 1748.940000 2012.190000 1674.420000 2076.730000 1909.110000 1686.990000 1462.690000 1735.420000 1677.640000 19.199017 78.235833
Gene:AT2G26530 OctamerElement:AtREG473 | OctamerElement:AtREG652 REG CGGTTTAA | ACGGTTTA 77.5 | 78.5 TAIR9 TAIR:At2g26530 Chr2 11284099 | 11284100 81 | 82 11284092 | 11284093 74 | 75 - 11284018 29 11283989 245041_at Circadian_Condition:DD_DDHC 12 0.622607 6.500010 7.664830 6.073490 5.977440 4.418870 4.737680 5.439890 6.553430 5.935840 13.615000 5.697770 6.974110 8.235001 0.574835
Gene:AT2G26530 OctamerElement:AtREG571 | OctamerElement:AtREG581 | OctamerElement:AtREG372 | OctamerElement:AtREG386 REG TGGGCTAA | ATGGGCTA | AATGGGCT | AAATGGGC 251.5 | 252.5 | 253.5 | 254.5 TAIR9 TAIR:At2g26530 Chr2 11284273 | 11284274 | 11284275 | 11284276 255 | 256 | 257 | 258 11284266 | 11284267 | 11284268 | 11284269 248 | 249 | 250 | 251 - 11284018 29 11283989 245041_at Circadian_Condition:DD_DDHC 12 0.622607 6.500010 7.664830 6.073490 5.977440 4.418870 4.737680 5.439890 6.553430 5.935840 13.615000 5.697770 6.974110 8.235001 0.574835
Gene:AT2G26570 OctamerElement:AtREG494 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 REG CCGGGTCG | CGGGTCGG | GGGTCGGG | GGTCGGGT 273.5 | 272.5 | 271.5 | 270.5 TAIR9 TAIR:At2g26570 Chr2 11298756 | 11298757 | 11298758 | 11298759 -277 | -276 | -275 | -274 11298763 | 11298764 | 11298765 | 11298766 -270 | -269 | -268 | -267 + 11299033 -532 11299565 245028_at Circadian_Condition:DD_DDHC 23 0.682467 82.918300 125.883000 86.000300 59.586700 77.374900 137.347000 115.157000 182.403000 105.351000 56.590200 125.121000 128.001000 18.607042 14.498692
Gene:AT2G26570 OctamerElement:AtREG513 REG ACGTGGAC 134.5 TAIR9 TAIR:At2g26570 Chr2 11298895 -138 11298902 -131 + 11299033 -532 11299565 245028_at Circadian_Condition:DD_DDHC 23 0.682467 82.918300 125.883000 86.000300 59.586700 77.374900 137.347000 115.157000 182.403000 105.351000 56.590200 125.121000 128.001000 18.607042 14.498692
Gene:AT2G26590 OctamerElement:AtREG525 | OctamerElement:AtREG407 | OctamerElement:AtREG402 REG TGGGCTTG | TTGGGCTT | ATTGGGCT 107.5 | 108.5 | 109.5 TAIR9 TAIR:At2g26590 Chr2 11315188 | 11315189 | 11315190 111 | 112 | 113 11315181 | 11315182 | 11315183 104 | 105 | 106 - 11315077 360 11314717 245045_at Circadian_Condition:DD_DDHC 0 0.662230 676.838000 551.680000 574.926000 539.943000 471.662000 456.261000 597.236000 380.327000 413.056000 319.634000 342.419000 337.388000 20.380200 38.615453
Gene:AT2G26590 OctamerElement:AtREG549 REG TAAAAGCC 135.5 TAIR9 TAIR:At2g26590 Chr2 11315216 139 11315209 132 - 11315077 360 11314717 245045_at Circadian_Condition:DD_DDHC 0 0.662230 676.838000 551.680000 574.926000 539.943000 471.662000 456.261000 597.236000 380.327000 413.056000 319.634000 342.419000 337.388000 20.380200 38.615453
Gene:AT2G26590 OctamerElement:AtREG578 | OctamerElement:AtREG483 | OctamerElement:AtREG606 REG ACGTCATC | CACGTCAT | TGTCACGT 271.5 | 272.5 | 275.5 TAIR9 TAIR:At2g26590 Chr2 11315352 | 11315353 | 11315356 275 | 276 | 279 11315345 | 11315346 | 11315349 268 | 269 | 272 - 11315077 360 11314717 245045_at Circadian_Condition:DD_DDHC 0 0.662230 676.838000 551.680000 574.926000 539.943000 471.662000 456.261000 597.236000 380.327000 413.056000 319.634000 342.419000 337.388000 20.380200 38.615453
Gene:AT1G01050 At180 | At207 | At261 | At290 TATA TATATACA | ATATATAC | CATATATA | TCATATAT 26.5 | 27.5 | 28.5 | 29.5 TAIR9 TAIR:At1g01050 Chr1 33147 | 33148 | 33149 | 33150 30 | 31 | 32 | 33 33140 | 33141 | 33142 | 33143 23 | 24 | 25 | 26 - 33117 447 32670 261579_at Circadian_Condition:DD_DDHC 18 0.715869 1210.860000 1053.430000 1022.000000 1061.240000 1212.670000 1086.790000 1150.100000 956.554000 1156.530000 1142.260000 1141.670000 1137.610000 12.092856 28.170459
Gene:AT1G01070 At153 TATA ATATAGAG 26.5 TAIR9 TAIR:At1g01070 Chr1 40891 30 40884 23 - 40861 264 40597 261576_at Circadian_Condition:DD_DDHC 3 0.651118 44.621900 46.187300 16.862500 35.690900 17.007800 26.947800 21.931300 44.203300 32.733600 29.065000 17.282100 37.165700 20.942845 4.309034
Gene:AT2G26560 At227 | At231 | At281 | At304 TATA TATAAATA | CTATAAAT | CCTATAAA | TCCTATAA 27.5 | 28.5 | 29.5 | 30.5 TAIR9 TAIR:At2g26560 Chr2 11295837 | 11295838 | 11295839 | 11295840 31 | 32 | 33 | 34 11295830 | 11295831 | 11295832 | 11295833 24 | 25 | 26 | 27 - 11295806 98 11295708 245038_at Circadian_Condition:DD_DDHC 15 0.367355 7.359650 6.829200 7.943410 6.944200 5.323400 9.347840 10.424600 7.716660 11.925100 14.935700 11.987700 10.874300 4.200118 0.495822
Gene:AT1G01010 At708 | At121 | At050 Y CTTCCTCC | CCTCCCTC | CTCCCTCC 45.5 | 42.5 | 41.5 TAIR9 TAIR:At1g01010 Chr1 3619 | 3622 | 3623 -49 | -46 | -45 3626 | 3629 | 3630 -42 | -39 | -38 + 3668 -92 3760 261585_at Circadian_Condition:DD_DDHC 19 0.597084 7.267360 9.425840 7.421170 8.471690 7.249960 14.457200 11.177600 10.451800 12.391500 13.253200 15.618100 15.322900 23.929013 0.935314
Gene:AT1G01050 At033 | At026 | At006 Y TCTCTCCC | TTCTCTCC | TTTCTCTC 20.5 | 19.5 | 18.5 TAIR9 TAIR:At1g01050 Chr1 33100 | 33101 | 33102 -17 | -16 | -15 33093 | 33094 | 33095 -24 | -23 | -22 - 33117 447 32670 261579_at Circadian_Condition:DD_DDHC 18 0.715869 1210.860000 1053.430000 1022.000000 1061.240000 1212.670000 1086.790000 1150.100000 956.554000 1156.530000 1142.260000 1141.670000 1137.610000 12.092856 28.170459
Gene:AT1G01060 At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At066 | At713 | At085 | At088 | At715 Y TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | CCTTCTTC | TCCTTCTT | TTCCTTCT | CTTCCTTC | TCTTCCTT 39.5 | 38.5 | 37.5 | 36.5 | 35.5 | 34.5 | 33.5 | 32.5 | 31.5 | 30.5 | 29.5 | 28.5 | 27.5 | 26.5 | 25.5 | 24.5 | 23.5 | 22.5 | 21.5 | 20.5 | 19.5 | 18.5 | 17.5 | 16.5 | 15.5 | 14.5 | 13.5 | 12.5 | 11.5 | 10.5 | 9.5 | 8.5 | 7.5 | 6.5 | 5.5 TAIR9 TAIR:At1g01060 Chr1 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 | 37771 | 37772 | 37773 | 37774 | 37775 | 37776 | 37777 -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 | -8 | -7 | -6 | -5 | -4 | -3 | -2 37736 | 37737 | 37738 | 37739 | 37740 | 37741 | 37742 | 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 -43 | -42 | -41 | -40 | -39 | -38 | -37 | -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 - 37779 718 37061 261569_at Circadian_Condition:DD_DDHC 0 0.933184 310.489000 207.992000 5.148140 3.982130 6.434480 157.119000 371.614000 413.806000 69.798700 12.804200 9.674470 143.560000 19.128643 94.166497
Gene:AT1G01060 At063 Y TCTTCTTC 14.5 TAIR9 TAIR:At1g01060 Chr1 37797 18 37790 11 - 37779 718 37061 261569_at Circadian_Condition:DD_DDHC 0 0.933184 310.489000 207.992000 5.148140 3.982130 6.434480 157.119000 371.614000 413.806000 69.798700 12.804200 9.674470 143.560000 19.128643 94.166497
Gene:AT1G01060 At042 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At075 | At083 | At040 | At009 Y CTTCTTCC | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | CTCTTCTT | TCTCTTCT | TTCTCTTC | CTTCTCTT 24.5 | 25.5 | 26.5 | 27.5 | 28.5 | 29.5 | 30.5 | 31.5 | 32.5 | 33.5 | 34.5 | 35.5 TAIR9 TAIR:At1g01060 Chr1 37807 | 37808 | 37809 | 37810 | 37811 | 37812 | 37813 | 37814 | 37815 | 37816 | 37817 | 37818 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 37800 | 37801 | 37802 | 37803 | 37804 | 37805 | 37806 | 37807 | 37808 | 37809 | 37810 | 37811 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 - 37779 718 37061 261569_at Circadian_Condition:DD_DDHC 0 0.933184 310.489000 207.992000 5.148140 3.982130 6.434480 157.119000 371.614000 413.806000 69.798700 12.804200 9.674470 143.560000 19.128643 94.166497
Gene:AT1G01080 At005 Y TTCTTCTC 8.5 TAIR9 TAIR:At1g01080 Chr1 46825 -5 46818 -12 - 46830 41 46789 261577_at Circadian_Condition:DD_DDHC 12 0.545759 107.567000 159.298000 173.358000 184.597000 206.954000 155.523000 115.588000 164.983000 130.624000 91.837200 150.258000 170.998000 8.626915 6.306434
Gene:AT1G01090 At090 Y CTCTCTTT 29.5 TAIR9 TAIR:At1g01090 Chr1 49245 -26 49238 -33 - 49271 105 49166 261583_at Circadian_Condition:DD_DDHC 2 0.731487 1905.980000 2127.740000 1710.560000 1748.940000 2012.190000 1674.420000 2076.730000 1909.110000 1686.990000 1462.690000 1735.420000 1677.640000 19.199017 78.235833
Gene:AT1G01090 At026 Y TTCTCTCC 10.5 TAIR9 TAIR:At1g01090 Chr1 49264 -7 49257 -14 - 49271 105 49166 261583_at Circadian_Condition:DD_DDHC 2 0.731487 1905.980000 2127.740000 1710.560000 1748.940000 2012.190000 1674.420000 2076.730000 1909.110000 1686.990000 1462.690000 1735.420000 1677.640000 19.199017 78.235833
Gene:AT1G01090 At114 Y CCTCCTCT 12.5 TAIR9 TAIR:At1g01090 Chr1 49287 16 49280 9 - 49271 105 49166 261583_at Circadian_Condition:DD_DDHC 2 0.731487 1905.980000 2127.740000 1710.560000 1748.940000 2012.190000 1674.420000 2076.730000 1909.110000 1686.990000 1462.690000 1735.420000 1677.640000 19.199017 78.235833
Gene:AT2G26500 At710 | At348 | At712 | At701 Y TCCTCCTT | CCTCCTTC | TCCTTCCT | CCTTCCTT 45.5 | 44.5 | 42.5 | 41.5 TAIR9 TAIR:At2g26500 Chr2 11270177 | 11270178 | 11270180 | 11270181 -49 | -48 | -46 | -45 11270184 | 11270185 | 11270187 | 11270188 -42 | -41 | -39 | -38 + 11270226 -144 11270370 245044_at Circadian_Condition:DD_DDHC 13 0.401872 1297.060000 2020.620000 1868.180000 2387.440000 3278.610000 2219.760000 2701.560000 3161.840000 3071.900000 2797.920000 2445.760000 3716.720000 9.615841 136.814678
Gene:AT2G26500 At004 | At009 | At040 | At083 | At075 Y TCTTCTCT | CTTCTCTT | TTCTCTTC | TCTCTTCT | CTCTTCTT 25.5 | 24.5 | 23.5 | 22.5 | 21.5 TAIR9 TAIR:At2g26500 Chr2 11270197 | 11270198 | 11270199 | 11270200 | 11270201 -29 | -28 | -27 | -26 | -25 11270204 | 11270205 | 11270206 | 11270207 | 11270208 -22 | -21 | -20 | -19 | -18 + 11270226 -144 11270370 245044_at Circadian_Condition:DD_DDHC 13 0.401872 1297.060000 2020.620000 1868.180000 2387.440000 3278.610000 2219.760000 2701.560000 3161.840000 3071.900000 2797.920000 2445.760000 3716.720000 9.615841 136.814678
Gene:AT2G26500 At020 | At717 | At060 Y CTTCTCCT | TTCTCCTT | CTCCTTTC 10.5 | 9.5 | 7.5 TAIR9 TAIR:At2g26500 Chr2 11270212 | 11270213 | 11270215 -14 | -13 | -11 11270219 | 11270220 | 11270222 -7 | -6 | -4 + 11270226 -144 11270370 245044_at Circadian_Condition:DD_DDHC 13 0.401872 1297.060000 2020.620000 1868.180000 2387.440000 3278.610000 2219.760000 2701.560000 3161.840000 3071.900000 2797.920000 2445.760000 3716.720000 9.615841 136.814678
Gene:AT2G26500 At009 Y CTTCTCTT 14.5 TAIR9 TAIR:At2g26500 Chr2 11270237 11 11270244 18 + 11270226 -144 11270370 245044_at Circadian_Condition:DD_DDHC 13 0.401872 1297.060000 2020.620000 1868.180000 2387.440000 3278.610000 2219.760000 2701.560000 3161.840000 3071.900000 2797.920000 2445.760000 3716.720000 9.615841 136.814678
Gene:AT2G26510 At004 | At009 Y TCTTCTCT | CTTCTCTT 33.5 | 34.5 TAIR9 TAIR:At2g26510 Chr2 11273999 | 11274000 30 | 31 11274006 | 11274007 37 | 38 + 11273969 -149 11274118 245046_at Circadian_Condition:DD_DDHC 21 0.300924 784.990000 713.288000 631.479000 900.451000 763.532000 786.660000 629.956000 651.409000 757.792000 409.489000 606.840000 673.366000 16.286804 12.720298
Gene:AT2G26530 At005 | At051 | At066 Y TTCTTCTC | CTTCTTCT | CCTTCTTC 19.5 | 20.5 | 21.5 TAIR9 TAIR:At2g26530 Chr2 11284041 | 11284042 | 11284043 23 | 24 | 25 11284034 | 11284035 | 11284036 16 | 17 | 18 - 11284018 29 11283989 245041_at Circadian_Condition:DD_DDHC 12 0.622607 6.500010 7.664830 6.073490 5.977440 4.418870 4.737680 5.439890 6.553430 5.935840 13.615000 5.697770 6.974110 8.235001 0.574835
Gene:AT2G26580 At705 | At079 | At035 Y CTCTCCTT | CCTCTCCT | TCCTCTCC 41.5 | 40.5 | 39.5 TAIR9 TAIR:At2g26580 Chr2 11306971 | 11306972 | 11306973 -38 | -37 | -36 11306964 | 11306965 | 11306966 -45 | -44 | -43 - 11307009 270 11306739 245029_at Circadian_Condition:DD_DDHC 2 0.694475 20.916400 17.996800 16.271300 15.127100 17.543100 15.722700 22.781300 23.872500 19.371900 16.766600 19.064300 20.107500 19.122071 1.264889
Gene:AT2G26590 At026 | At006 | At008 | At007 Y TTCTCTCC | TTTCTCTC | CTTTCTCT | TCTTTCTC 19.5 | 18.5 | 17.5 | 16.5 TAIR9 TAIR:At2g26590 Chr2 11315061 | 11315062 | 11315063 | 11315064 -16 | -15 | -14 | -13 11315054 | 11315055 | 11315056 | 11315057 -23 | -22 | -21 | -20 - 11315077 360 11314717 245045_at Circadian_Condition:DD_DDHC 0 0.662230 676.838000 551.680000 574.926000 539.943000 471.662000 456.261000 597.236000 380.327000 413.056000 319.634000 342.419000 337.388000 20.380200 38.615453
Gene:AT1G01010 At723 | At728 | At722 GA CGAGAGAG | GAGAGAGA | AGAGAGAT 32.5 | 33.5 | 34.5 TAIR9 TAIR:At1g01010 Chr1 3697 | 3698 | 3699 29 | 30 | 31 3704 | 3705 | 3706 36 | 37 | 38 + 3668 -92 3760 261585_at Circadian_Condition:DD_DDHC 19 0.597084 7.267360 9.425840 7.421170 8.471690 7.249960 14.457200 11.177600 10.451800 12.391500 13.253200 15.618100 15.322900 23.929013 0.935314
Gene:AT1G01070 At730 | At722 | At728 | At721 | At731 GA GAGAGATA | AGAGAGAT | GAGAGAGA | AGAGAGAG | TAGAGAGA 19.5 | 20.5 | 21.5 | 22.5 | 23.5 TAIR9 TAIR:At1g01070 Chr1 40884 | 40885 | 40886 | 40887 | 40888 23 | 24 | 25 | 26 | 27 40877 | 40878 | 40879 | 40880 | 40881 16 | 17 | 18 | 19 | 20 - 40861 264 40597 261576_at Circadian_Condition:DD_DDHC 3 0.651118 44.621900 46.187300 16.862500 35.690900 17.007800 26.947800 21.931300 44.203300 32.733600 29.065000 17.282100 37.165700 20.942845 4.309034
Gene:AT2G26570 At734 | At721 | At728 | At719 GA AAGAGAGA | AGAGAGAG | GAGAGAGA | AGAGAGAA 11.5 | 10.5 | 9.5 | 8.5 TAIR9 TAIR:At2g26570 Chr2 11299018 | 11299019 | 11299020 | 11299021 -15 | -14 | -13 | -12 11299025 | 11299026 | 11299027 | 11299028 -8 | -7 | -6 | -5 + 11299033 -532 11299565 245028_at Circadian_Condition:DD_DDHC 23 0.682467 82.918300 125.883000 86.000300 59.586700 77.374900 137.347000 115.157000 182.403000 105.351000 56.590200 125.121000 128.001000 18.607042 14.498692
Gene:AT2G26570 At730 GA GAGAGATA 28.5 TAIR9 TAIR:At2g26570 Chr2 11299058 25 11299065 32 + 11299033 -532 11299565 245028_at Circadian_Condition:DD_DDHC 23 0.682467 82.918300 125.883000 86.000300 59.586700 77.374900 137.347000 115.157000 182.403000 105.351000 56.590200 125.121000 128.001000 18.607042 14.498692
* Row count is limited to 100.