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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
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#LINK
#lang en
#attribution_name Koro NISHIKATA
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PPDB_LDHC
#download_from http://linkdata.org/work/rdf1s289i
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s219i/Octamer_elements.html#
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp TAIR gene chromosome position start position start from TSS peak position end position end from TSS peak strand sequence TSS peak position TSS peak position from Initiation codon Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd string:en string:en string:en float string:en string:en string:en integer integer integer integer string:en string:en integer integer string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 TAIR:At1g01010 Chr1 3455 | 3456 -213 | -212 3462 | 3463 -206 | -205 + 3668 -92 3760 261585_at Diurnal_Condition:LDHC 21 0.957951 13.175600 10.580300 8.676940 8.116520 8.006380 18.697700 13.403400 7.916100 8.646590 7.502840 10.282000 17.397800 15.455113 2.167712
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 TAIR:At1g01010 Chr1 3535 | 3536 | 3537 -133 | -132 | -131 3542 | 3543 | 3544 -126 | -125 | -124 + 3668 -92 3760 261585_at Diurnal_Condition:LDHC 21 0.957951 13.175600 10.580300 8.676940 8.116520 8.006380 18.697700 13.403400 7.916100 8.646590 7.502840 10.282000 17.397800 15.455113 2.167712
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 TAIR:At1g01010 Chr1 3601 -67 3608 -60 + 3668 -92 3760 261585_at Diurnal_Condition:LDHC 21 0.957951 13.175600 10.580300 8.676940 8.116520 8.006380 18.697700 13.403400 7.916100 8.646590 7.502840 10.282000 17.397800 15.455113 2.167712
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 TAIR:At1g01060 Chr1 37913 134 37906 127 - 37779 718 37061 261569_at Diurnal_Condition:LDHC 23 0.975758 2829.800000 455.767000 6.507330 4.340080 4.552510 775.053000 2305.150000 421.857000 4.645480 3.920110 5.004530 704.438000 17.685271 526.360105
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 TAIR:At1g01060 Chr1 37950 | 37951 | 37952 | 37953 171 | 172 | 173 | 174 37943 | 37944 | 37945 | 37946 164 | 165 | 166 | 167 - 37779 718 37061 261569_at Diurnal_Condition:LDHC 23 0.975758 2829.800000 455.767000 6.507330 4.340080 4.552510 775.053000 2305.150000 421.857000 4.645480 3.920110 5.004530 704.438000 17.685271 526.360105
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 TAIR:At1g01070 Chr1 40933 72 40926 65 - 40861 264 40597 261576_at Diurnal_Condition:LDHC 3 0.807961 17.414800 16.255400 10.608100 5.038850 7.977150 6.631470 17.062000 8.907300 13.134900 7.023690 6.698480 12.136300 19.867557 2.375877
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 TAIR:At1g01080 Chr1 46877 | 46878 | 46879 | 46880 | 46881 47 | 48 | 49 | 50 | 51 46870 | 46871 | 46872 | 46873 | 46874 40 | 41 | 42 | 43 | 44 - 46830 41 46789 261577_at Diurnal_Condition:LDHC 12 0.794410 307.366000 320.192000 364.904000 510.382000 229.839000 391.323000 261.345000 362.749000 332.879000 508.143000 333.875000 424.624000 5.989380 27.593315
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 TAIR:At1g01080 Chr1 46978 | 46979 | 46980 | 46981 | 46982 148 | 149 | 150 | 151 | 152 46971 | 46972 | 46973 | 46974 | 46975 141 | 142 | 143 | 144 | 145 - 46830 41 46789 261577_at Diurnal_Condition:LDHC 12 0.794410 307.366000 320.192000 364.904000 510.382000 229.839000 391.323000 261.345000 362.749000 332.879000 508.143000 333.875000 424.624000 5.989380 27.593315
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 TAIR:At1g01080 Chr1 47119 | 47120 | 47121 | 47122 289 | 290 | 291 | 292 47112 | 47113 | 47114 | 47115 282 | 283 | 284 | 285 - 46830 41 46789 261577_at Diurnal_Condition:LDHC 12 0.794410 307.366000 320.192000 364.904000 510.382000 229.839000 391.323000 261.345000 362.749000 332.879000 508.143000 333.875000 424.624000 5.989380 27.593315
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 TAIR:At1g01090 Chr1 49365 94 49358 87 - 49271 105 49166 261583_at Diurnal_Condition:LDHC 1 0.836233 2632.930000 2951.520000 2410.490000 2192.300000 2658.370000 2809.580000 3030.560000 2673.220000 2524.370000 2408.810000 2473.850000 2833.000000 18.426416 139.409457
Gene:AT2G26530 OctamerElement:AtREG473 | OctamerElement:AtREG652 REG CGGTTTAA | ACGGTTTA 77.5 | 78.5 TAIR9 TAIR:At2g26530 Chr2 11284099 | 11284100 81 | 82 11284092 | 11284093 74 | 75 - 11284018 29 11283989 245041_at Diurnal_Condition:LDHC 0 0.579199 47.861600 65.508100 127.752000 22.097000 57.617600 77.016800 70.651500 76.414800 58.746000 38.919200 113.854000 50.945100 22.120715 2.373502
Gene:AT2G26530 OctamerElement:AtREG571 | OctamerElement:AtREG581 | OctamerElement:AtREG372 | OctamerElement:AtREG386 REG TGGGCTAA | ATGGGCTA | AATGGGCT | AAATGGGC 251.5 | 252.5 | 253.5 | 254.5 TAIR9 TAIR:At2g26530 Chr2 11284273 | 11284274 | 11284275 | 11284276 255 | 256 | 257 | 258 11284266 | 11284267 | 11284268 | 11284269 248 | 249 | 250 | 251 - 11284018 29 11283989 245041_at Diurnal_Condition:LDHC 0 0.579199 47.861600 65.508100 127.752000 22.097000 57.617600 77.016800 70.651500 76.414800 58.746000 38.919200 113.854000 50.945100 22.120715 2.373502
Gene:AT2G26570 OctamerElement:AtREG494 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 REG CCGGGTCG | CGGGTCGG | GGGTCGGG | GGTCGGGT 273.5 | 272.5 | 271.5 | 270.5 TAIR9 TAIR:At2g26570 Chr2 11298756 | 11298757 | 11298758 | 11298759 -277 | -276 | -275 | -274 11298763 | 11298764 | 11298765 | 11298766 -270 | -269 | -268 | -267 + 11299033 -532 11299565 245028_at Diurnal_Condition:LDHC 4 0.812732 194.629000 214.133000 170.395000 168.674000 66.352900 113.876000 172.648000 269.963000 277.392000 144.155000 162.210000 152.608000 23.092952 32.436169
Gene:AT2G26570 OctamerElement:AtREG513 REG ACGTGGAC 134.5 TAIR9 TAIR:At2g26570 Chr2 11298895 -138 11298902 -131 + 11299033 -532 11299565 245028_at Diurnal_Condition:LDHC 4 0.812732 194.629000 214.133000 170.395000 168.674000 66.352900 113.876000 172.648000 269.963000 277.392000 144.155000 162.210000 152.608000 23.092952 32.436169
Gene:AT2G26590 OctamerElement:AtREG525 | OctamerElement:AtREG407 | OctamerElement:AtREG402 REG TGGGCTTG | TTGGGCTT | ATTGGGCT 107.5 | 108.5 | 109.5 TAIR9 TAIR:At2g26590 Chr2 11315188 | 11315189 | 11315190 111 | 112 | 113 11315181 | 11315182 | 11315183 104 | 105 | 106 - 11315077 360 11314717 245045_at Diurnal_Condition:LDHC 20 0.902540 277.956000 247.240000 262.759000 260.445000 308.856000 381.352000 321.682000 316.355000 242.073000 257.565000 306.698000 368.740000 14.313803 26.092460
Gene:AT2G26590 OctamerElement:AtREG549 REG TAAAAGCC 135.5 TAIR9 TAIR:At2g26590 Chr2 11315216 139 11315209 132 - 11315077 360 11314717 245045_at Diurnal_Condition:LDHC 20 0.902540 277.956000 247.240000 262.759000 260.445000 308.856000 381.352000 321.682000 316.355000 242.073000 257.565000 306.698000 368.740000 14.313803 26.092460
Gene:AT2G26590 OctamerElement:AtREG578 | OctamerElement:AtREG483 | OctamerElement:AtREG606 REG ACGTCATC | CACGTCAT | TGTCACGT 271.5 | 272.5 | 275.5 TAIR9 TAIR:At2g26590 Chr2 11315352 | 11315353 | 11315356 275 | 276 | 279 11315345 | 11315346 | 11315349 268 | 269 | 272 - 11315077 360 11314717 245045_at Diurnal_Condition:LDHC 20 0.902540 277.956000 247.240000 262.759000 260.445000 308.856000 381.352000 321.682000 316.355000 242.073000 257.565000 306.698000 368.740000 14.313803 26.092460
Gene:AT1G01050 At180 | At207 | At261 | At290 TATA TATATACA | ATATATAC | CATATATA | TCATATAT 26.5 | 27.5 | 28.5 | 29.5 TAIR9 TAIR:At1g01050 Chr1 33147 | 33148 | 33149 | 33150 30 | 31 | 32 | 33 33140 | 33141 | 33142 | 33143 23 | 24 | 25 | 26 - 33117 447 32670 261579_at Diurnal_Condition:LDHC 23 0.873643 865.066000 561.266000 487.413000 590.691000 682.420000 760.905000 1050.400000 696.231000 595.639000 681.137000 669.443000 796.714000 15.961226 80.703652
Gene:AT1G01070 At153 TATA ATATAGAG 26.5 TAIR9 TAIR:At1g01070 Chr1 40891 30 40884 23 - 40861 264 40597 261576_at Diurnal_Condition:LDHC 3 0.807961 17.414800 16.255400 10.608100 5.038850 7.977150 6.631470 17.062000 8.907300 13.134900 7.023690 6.698480 12.136300 19.867557 2.375877
Gene:AT2G26560 At227 | At231 | At281 | At304 TATA TATAAATA | CTATAAAT | CCTATAAA | TCCTATAA 27.5 | 28.5 | 29.5 | 30.5 TAIR9 TAIR:At2g26560 Chr2 11295837 | 11295838 | 11295839 | 11295840 31 | 32 | 33 | 34 11295830 | 11295831 | 11295832 | 11295833 24 | 25 | 26 | 27 - 11295806 98 11295708 245038_at Diurnal_Condition:LDHC 23 0.693871 222.568000 21.163200 216.452000 25.297100 82.705400 180.881000 206.856000 40.923900 87.340800 21.084700 118.524000 110.803000 16.687293 27.209084
Gene:AT1G01010 At708 | At121 | At050 Y CTTCCTCC | CCTCCCTC | CTCCCTCC 45.5 | 42.5 | 41.5 TAIR9 TAIR:At1g01010 Chr1 3619 | 3622 | 3623 -49 | -46 | -45 3626 | 3629 | 3630 -42 | -39 | -38 + 3668 -92 3760 261585_at Diurnal_Condition:LDHC 21 0.957951 13.175600 10.580300 8.676940 8.116520 8.006380 18.697700 13.403400 7.916100 8.646590 7.502840 10.282000 17.397800 15.455113 2.167712
Gene:AT1G01050 At033 | At026 | At006 Y TCTCTCCC | TTCTCTCC | TTTCTCTC 20.5 | 19.5 | 18.5 TAIR9 TAIR:At1g01050 Chr1 33100 | 33101 | 33102 -17 | -16 | -15 33093 | 33094 | 33095 -24 | -23 | -22 - 33117 447 32670 261579_at Diurnal_Condition:LDHC 23 0.873643 865.066000 561.266000 487.413000 590.691000 682.420000 760.905000 1050.400000 696.231000 595.639000 681.137000 669.443000 796.714000 15.961226 80.703652
Gene:AT1G01060 At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At066 | At713 | At085 | At088 | At715 Y TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | CCTTCTTC | TCCTTCTT | TTCCTTCT | CTTCCTTC | TCTTCCTT 39.5 | 38.5 | 37.5 | 36.5 | 35.5 | 34.5 | 33.5 | 32.5 | 31.5 | 30.5 | 29.5 | 28.5 | 27.5 | 26.5 | 25.5 | 24.5 | 23.5 | 22.5 | 21.5 | 20.5 | 19.5 | 18.5 | 17.5 | 16.5 | 15.5 | 14.5 | 13.5 | 12.5 | 11.5 | 10.5 | 9.5 | 8.5 | 7.5 | 6.5 | 5.5 TAIR9 TAIR:At1g01060 Chr1 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 | 37771 | 37772 | 37773 | 37774 | 37775 | 37776 | 37777 -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 | -8 | -7 | -6 | -5 | -4 | -3 | -2 37736 | 37737 | 37738 | 37739 | 37740 | 37741 | 37742 | 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 -43 | -42 | -41 | -40 | -39 | -38 | -37 | -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 - 37779 718 37061 261569_at Diurnal_Condition:LDHC 23 0.975758 2829.800000 455.767000 6.507330 4.340080 4.552510 775.053000 2305.150000 421.857000 4.645480 3.920110 5.004530 704.438000 17.685271 526.360105
Gene:AT1G01060 At063 Y TCTTCTTC 14.5 TAIR9 TAIR:At1g01060 Chr1 37797 18 37790 11 - 37779 718 37061 261569_at Diurnal_Condition:LDHC 23 0.975758 2829.800000 455.767000 6.507330 4.340080 4.552510 775.053000 2305.150000 421.857000 4.645480 3.920110 5.004530 704.438000 17.685271 526.360105
Gene:AT1G01060 At042 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At075 | At083 | At040 | At009 Y CTTCTTCC | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | CTCTTCTT | TCTCTTCT | TTCTCTTC | CTTCTCTT 24.5 | 25.5 | 26.5 | 27.5 | 28.5 | 29.5 | 30.5 | 31.5 | 32.5 | 33.5 | 34.5 | 35.5 TAIR9 TAIR:At1g01060 Chr1 37807 | 37808 | 37809 | 37810 | 37811 | 37812 | 37813 | 37814 | 37815 | 37816 | 37817 | 37818 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 37800 | 37801 | 37802 | 37803 | 37804 | 37805 | 37806 | 37807 | 37808 | 37809 | 37810 | 37811 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 - 37779 718 37061 261569_at Diurnal_Condition:LDHC 23 0.975758 2829.800000 455.767000 6.507330 4.340080 4.552510 775.053000 2305.150000 421.857000 4.645480 3.920110 5.004530 704.438000 17.685271 526.360105
Gene:AT1G01080 At005 Y TTCTTCTC 8.5 TAIR9 TAIR:At1g01080 Chr1 46825 -5 46818 -12 - 46830 41 46789 261577_at Diurnal_Condition:LDHC 12 0.794410 307.366000 320.192000 364.904000 510.382000 229.839000 391.323000 261.345000 362.749000 332.879000 508.143000 333.875000 424.624000 5.989380 27.593315
Gene:AT1G01090 At090 Y CTCTCTTT 29.5 TAIR9 TAIR:At1g01090 Chr1 49245 -26 49238 -33 - 49271 105 49166 261583_at Diurnal_Condition:LDHC 1 0.836233 2632.930000 2951.520000 2410.490000 2192.300000 2658.370000 2809.580000 3030.560000 2673.220000 2524.370000 2408.810000 2473.850000 2833.000000 18.426416 139.409457
Gene:AT1G01090 At026 Y TTCTCTCC 10.5 TAIR9 TAIR:At1g01090 Chr1 49264 -7 49257 -14 - 49271 105 49166 261583_at Diurnal_Condition:LDHC 1 0.836233 2632.930000 2951.520000 2410.490000 2192.300000 2658.370000 2809.580000 3030.560000 2673.220000 2524.370000 2408.810000 2473.850000 2833.000000 18.426416 139.409457
Gene:AT1G01090 At114 Y CCTCCTCT 12.5 TAIR9 TAIR:At1g01090 Chr1 49287 16 49280 9 - 49271 105 49166 261583_at Diurnal_Condition:LDHC 1 0.836233 2632.930000 2951.520000 2410.490000 2192.300000 2658.370000 2809.580000 3030.560000 2673.220000 2524.370000 2408.810000 2473.850000 2833.000000 18.426416 139.409457
Gene:AT2G26500 At710 | At348 | At712 | At701 Y TCCTCCTT | CCTCCTTC | TCCTTCCT | CCTTCCTT 45.5 | 44.5 | 42.5 | 41.5 TAIR9 TAIR:At2g26500 Chr2 11270177 | 11270178 | 11270180 | 11270181 -49 | -48 | -46 | -45 11270184 | 11270185 | 11270187 | 11270188 -42 | -41 | -39 | -38 + 11270226 -144 11270370 245044_at Diurnal_Condition:LDHC 18 0.845971 6835.500000 6141.950000 6310.520000 7145.280000 6623.230000 7269.060000 6597.060000 5794.310000 5774.820000 6536.400000 6850.990000 6697.550000 11.900097 246.846096
Gene:AT2G26500 At004 | At009 | At040 | At083 | At075 Y TCTTCTCT | CTTCTCTT | TTCTCTTC | TCTCTTCT | CTCTTCTT 25.5 | 24.5 | 23.5 | 22.5 | 21.5 TAIR9 TAIR:At2g26500 Chr2 11270197 | 11270198 | 11270199 | 11270200 | 11270201 -29 | -28 | -27 | -26 | -25 11270204 | 11270205 | 11270206 | 11270207 | 11270208 -22 | -21 | -20 | -19 | -18 + 11270226 -144 11270370 245044_at Diurnal_Condition:LDHC 18 0.845971 6835.500000 6141.950000 6310.520000 7145.280000 6623.230000 7269.060000 6597.060000 5794.310000 5774.820000 6536.400000 6850.990000 6697.550000 11.900097 246.846096
Gene:AT2G26500 At020 | At717 | At060 Y CTTCTCCT | TTCTCCTT | CTCCTTTC 10.5 | 9.5 | 7.5 TAIR9 TAIR:At2g26500 Chr2 11270212 | 11270213 | 11270215 -14 | -13 | -11 11270219 | 11270220 | 11270222 -7 | -6 | -4 + 11270226 -144 11270370 245044_at Diurnal_Condition:LDHC 18 0.845971 6835.500000 6141.950000 6310.520000 7145.280000 6623.230000 7269.060000 6597.060000 5794.310000 5774.820000 6536.400000 6850.990000 6697.550000 11.900097 246.846096
Gene:AT2G26500 At009 Y CTTCTCTT 14.5 TAIR9 TAIR:At2g26500 Chr2 11270237 11 11270244 18 + 11270226 -144 11270370 245044_at Diurnal_Condition:LDHC 18 0.845971 6835.500000 6141.950000 6310.520000 7145.280000 6623.230000 7269.060000 6597.060000 5794.310000 5774.820000 6536.400000 6850.990000 6697.550000 11.900097 246.846096
Gene:AT2G26510 At004 | At009 Y TCTTCTCT | CTTCTCTT 33.5 | 34.5 TAIR9 TAIR:At2g26510 Chr2 11273999 | 11274000 30 | 31 11274006 | 11274007 37 | 38 + 11273969 -149 11274118 245046_at Diurnal_Condition:LDHC 15 0.910758 216.195000 159.109000 409.694000 377.929000 335.976000 393.314000 311.106000 177.753000 366.121000 359.784000 320.842000 334.984000 8.060329 38.280788
Gene:AT2G26530 At005 | At051 | At066 Y TTCTTCTC | CTTCTTCT | CCTTCTTC 19.5 | 20.5 | 21.5 TAIR9 TAIR:At2g26530 Chr2 11284041 | 11284042 | 11284043 23 | 24 | 25 11284034 | 11284035 | 11284036 16 | 17 | 18 - 11284018 29 11283989 245041_at Diurnal_Condition:LDHC 0 0.579199 47.861600 65.508100 127.752000 22.097000 57.617600 77.016800 70.651500 76.414800 58.746000 38.919200 113.854000 50.945100 22.120715 2.373502
Gene:AT2G26580 At705 | At079 | At035 Y CTCTCCTT | CCTCTCCT | TCCTCTCC 41.5 | 40.5 | 39.5 TAIR9 TAIR:At2g26580 Chr2 11306971 | 11306972 | 11306973 -38 | -37 | -36 11306964 | 11306965 | 11306966 -45 | -44 | -43 - 11307009 270 11306739 245029_at Diurnal_Condition:LDHC 15 0.822634 187.179000 114.062000 232.505000 280.613000 214.907000 279.582000 134.802000 159.739000 183.231000 219.482000 265.728000 282.718000 9.717811 30.848561
Gene:AT2G26590 At026 | At006 | At008 | At007 Y TTCTCTCC | TTTCTCTC | CTTTCTCT | TCTTTCTC 19.5 | 18.5 | 17.5 | 16.5 TAIR9 TAIR:At2g26590 Chr2 11315061 | 11315062 | 11315063 | 11315064 -16 | -15 | -14 | -13 11315054 | 11315055 | 11315056 | 11315057 -23 | -22 | -21 | -20 - 11315077 360 11314717 245045_at Diurnal_Condition:LDHC 20 0.902540 277.956000 247.240000 262.759000 260.445000 308.856000 381.352000 321.682000 316.355000 242.073000 257.565000 306.698000 368.740000 14.313803 26.092460
Gene:AT1G01010 At723 | At728 | At722 GA CGAGAGAG | GAGAGAGA | AGAGAGAT 32.5 | 33.5 | 34.5 TAIR9 TAIR:At1g01010 Chr1 3697 | 3698 | 3699 29 | 30 | 31 3704 | 3705 | 3706 36 | 37 | 38 + 3668 -92 3760 261585_at Diurnal_Condition:LDHC 21 0.957951 13.175600 10.580300 8.676940 8.116520 8.006380 18.697700 13.403400 7.916100 8.646590 7.502840 10.282000 17.397800 15.455113 2.167712
Gene:AT1G01070 At730 | At722 | At728 | At721 | At731 GA GAGAGATA | AGAGAGAT | GAGAGAGA | AGAGAGAG | TAGAGAGA 19.5 | 20.5 | 21.5 | 22.5 | 23.5 TAIR9 TAIR:At1g01070 Chr1 40884 | 40885 | 40886 | 40887 | 40888 23 | 24 | 25 | 26 | 27 40877 | 40878 | 40879 | 40880 | 40881 16 | 17 | 18 | 19 | 20 - 40861 264 40597 261576_at Diurnal_Condition:LDHC 3 0.807961 17.414800 16.255400 10.608100 5.038850 7.977150 6.631470 17.062000 8.907300 13.134900 7.023690 6.698480 12.136300 19.867557 2.375877
Gene:AT2G26570 At734 | At721 | At728 | At719 GA AAGAGAGA | AGAGAGAG | GAGAGAGA | AGAGAGAA 11.5 | 10.5 | 9.5 | 8.5 TAIR9 TAIR:At2g26570 Chr2 11299018 | 11299019 | 11299020 | 11299021 -15 | -14 | -13 | -12 11299025 | 11299026 | 11299027 | 11299028 -8 | -7 | -6 | -5 + 11299033 -532 11299565 245028_at Diurnal_Condition:LDHC 4 0.812732 194.629000 214.133000 170.395000 168.674000 66.352900 113.876000 172.648000 269.963000 277.392000 144.155000 162.210000 152.608000 23.092952 32.436169
Gene:AT2G26570 At730 GA GAGAGATA 28.5 TAIR9 TAIR:At2g26570 Chr2 11299058 25 11299065 32 + 11299033 -532 11299565 245028_at Diurnal_Condition:LDHC 4 0.812732 194.629000 214.133000 170.395000 168.674000 66.352900 113.876000 172.648000 269.963000 277.392000 144.155000 162.210000 152.608000 23.092952 32.436169
* Row count is limited to 100.