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データセットの情報

GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
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#LINK
#lang en
#attribution_name Koro NISHIKATA
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PPDB_LIGHT5_HIF138_13
#download_from http://linkdata.org/work/rdf1s289i
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s219i/Octamer_elements.html#
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp TAIR gene chromosome position start position start from TSS peak position end position end from TSS peak strand sequence TSS peak position TSS peak position from Initiation codon Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd string:en string:en string:en float string:en string:en string:en integer integer integer integer string:en string:en integer integer string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 TAIR:At1g01010 Chr1 3455 | 3456 -213 | -212 3462 | 3463 -206 | -205 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_HIF138-13 6 0.741880 10.000000 11.000000 11.000000 11.000000 10.000000 10.000000 10.930200 11.290800 10.140500 10.524900 9.921600 9.024980 0.457924 0.325997
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 TAIR:At1g01010 Chr1 3535 | 3536 | 3537 -133 | -132 | -131 3542 | 3543 | 3544 -126 | -125 | -124 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_HIF138-13 6 0.741880 10.000000 11.000000 11.000000 11.000000 10.000000 10.000000 10.930200 11.290800 10.140500 10.524900 9.921600 9.024980 0.457924 0.325997
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 TAIR:At1g01010 Chr1 3601 -67 3608 -60 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_HIF138-13 6 0.741880 10.000000 11.000000 11.000000 11.000000 10.000000 10.000000 10.930200 11.290800 10.140500 10.524900 9.921600 9.024980 0.457924 0.325997
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 TAIR:At1g01060 Chr1 37913 134 37906 127 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_HIF138-13 0 0.994051 2931.000000 273.000000 9.000000 7.000000 8.000000 205.000000 2724.310000 263.199000 8.714710 6.932480 7.499720 195.727000 18.074740 507.866660
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 TAIR:At1g01060 Chr1 37950 | 37951 | 37952 | 37953 171 | 172 | 173 | 174 37943 | 37944 | 37945 | 37946 164 | 165 | 166 | 167 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_HIF138-13 0 0.994051 2931.000000 273.000000 9.000000 7.000000 8.000000 205.000000 2724.310000 263.199000 8.714710 6.932480 7.499720 195.727000 18.074740 507.866660
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 TAIR:At1g01070 Chr1 40933 72 40926 65 - 40861 264 40597 261576_at Diurnal_Condition:LIGHT5_HIF138-13 16 0.902119 8.000000 7.000000 9.000000 7.000000 11.000000 7.000000 8.297800 7.576380 8.225920 7.525810 11.140700 6.988500 2.938730 0.434696
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 TAIR:At1g01080 Chr1 46877 | 46878 | 46879 | 46880 | 46881 47 | 48 | 49 | 50 | 51 46870 | 46871 | 46872 | 46873 | 46874 40 | 41 | 42 | 43 | 44 - 46830 41 46789 261577_at Diurnal_Condition:LIGHT5_HIF138-13 11 0.913450 156.000000 201.000000 203.000000 249.000000 175.000000 174.000000 171.436000 190.655000 187.155000 266.401000 159.657000 187.121000 4.454508 15.772077
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 TAIR:At1g01080 Chr1 46978 | 46979 | 46980 | 46981 | 46982 148 | 149 | 150 | 151 | 152 46971 | 46972 | 46973 | 46974 | 46975 141 | 142 | 143 | 144 | 145 - 46830 41 46789 261577_at Diurnal_Condition:LIGHT5_HIF138-13 11 0.913450 156.000000 201.000000 203.000000 249.000000 175.000000 174.000000 171.436000 190.655000 187.155000 266.401000 159.657000 187.121000 4.454508 15.772077
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 TAIR:At1g01080 Chr1 47119 | 47120 | 47121 | 47122 289 | 290 | 291 | 292 47112 | 47113 | 47114 | 47115 282 | 283 | 284 | 285 - 46830 41 46789 261577_at Diurnal_Condition:LIGHT5_HIF138-13 11 0.913450 156.000000 201.000000 203.000000 249.000000 175.000000 174.000000 171.436000 190.655000 187.155000 266.401000 159.657000 187.121000 4.454508 15.772077
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 TAIR:At1g01090 Chr1 49365 94 49358 87 - 49271 105 49166 261583_at Diurnal_Condition:LIGHT5_HIF138-13 23 0.933326 4189.000000 3599.000000 3255.000000 3082.000000 3488.000000 3784.000000 4412.820000 3869.950000 2966.200000 3262.010000 3627.480000 3948.110000 16.837071 278.648157
Gene:AT2G26530 OctamerElement:AtREG473 | OctamerElement:AtREG652 REG CGGTTTAA | ACGGTTTA 77.5 | 78.5 TAIR9 TAIR:At2g26530 Chr2 11284099 | 11284100 81 | 82 11284092 | 11284093 74 | 75 - 11284018 29 11283989 245041_at Diurnal_Condition:LIGHT5_HIF138-13 7 0.990602 6.000000 12.000000 20.000000 6.000000 7.000000 6.000000 6.251890 12.978500 21.985500 5.483320 6.657200 6.519420 0.881938 3.023819
Gene:AT2G26530 OctamerElement:AtREG571 | OctamerElement:AtREG581 | OctamerElement:AtREG372 | OctamerElement:AtREG386 REG TGGGCTAA | ATGGGCTA | AATGGGCT | AAATGGGC 251.5 | 252.5 | 253.5 | 254.5 TAIR9 TAIR:At2g26530 Chr2 11284273 | 11284274 | 11284275 | 11284276 255 | 256 | 257 | 258 11284266 | 11284267 | 11284268 | 11284269 248 | 249 | 250 | 251 - 11284018 29 11283989 245041_at Diurnal_Condition:LIGHT5_HIF138-13 7 0.990602 6.000000 12.000000 20.000000 6.000000 7.000000 6.000000 6.251890 12.978500 21.985500 5.483320 6.657200 6.519420 0.881938 3.023819
Gene:AT2G26570 OctamerElement:AtREG494 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 REG CCGGGTCG | CGGGTCGG | GGGTCGGG | GGTCGGGT 273.5 | 272.5 | 271.5 | 270.5 TAIR9 TAIR:At2g26570 Chr2 11298756 | 11298757 | 11298758 | 11298759 -277 | -276 | -275 | -274 11298763 | 11298764 | 11298765 | 11298766 -270 | -269 | -268 | -267 + 11299033 -532 11299565 245028_at Diurnal_Condition:LIGHT5_HIF138-13 8 0.655340 109.000000 71.000000 106.000000 115.000000 105.000000 67.000000 117.194000 66.166200 99.528300 117.509000 103.303000 61.679400 5.765009 6.705005
Gene:AT2G26570 OctamerElement:AtREG513 REG ACGTGGAC 134.5 TAIR9 TAIR:At2g26570 Chr2 11298895 -138 11298902 -131 + 11299033 -532 11299565 245028_at Diurnal_Condition:LIGHT5_HIF138-13 8 0.655340 109.000000 71.000000 106.000000 115.000000 105.000000 67.000000 117.194000 66.166200 99.528300 117.509000 103.303000 61.679400 5.765009 6.705005
Gene:AT2G26590 OctamerElement:AtREG525 | OctamerElement:AtREG407 | OctamerElement:AtREG402 REG TGGGCTTG | TTGGGCTT | ATTGGGCT 107.5 | 108.5 | 109.5 TAIR9 TAIR:At2g26590 Chr2 11315188 | 11315189 | 11315190 111 | 112 | 113 11315181 | 11315182 | 11315183 104 | 105 | 106 - 11315077 360 11314717 245045_at Diurnal_Condition:LIGHT5_HIF138-13 18 0.850960 200.000000 196.000000 235.000000 196.000000 288.000000 273.000000 198.743000 184.567000 246.603000 212.718000 271.995000 250.664000 1.486486 17.276387
Gene:AT2G26590 OctamerElement:AtREG549 REG TAAAAGCC 135.5 TAIR9 TAIR:At2g26590 Chr2 11315216 139 11315209 132 - 11315077 360 11314717 245045_at Diurnal_Condition:LIGHT5_HIF138-13 18 0.850960 200.000000 196.000000 235.000000 196.000000 288.000000 273.000000 198.743000 184.567000 246.603000 212.718000 271.995000 250.664000 1.486486 17.276387
Gene:AT2G26590 OctamerElement:AtREG578 | OctamerElement:AtREG483 | OctamerElement:AtREG606 REG ACGTCATC | CACGTCAT | TGTCACGT 271.5 | 272.5 | 275.5 TAIR9 TAIR:At2g26590 Chr2 11315352 | 11315353 | 11315356 275 | 276 | 279 11315345 | 11315346 | 11315349 268 | 269 | 272 - 11315077 360 11314717 245045_at Diurnal_Condition:LIGHT5_HIF138-13 18 0.850960 200.000000 196.000000 235.000000 196.000000 288.000000 273.000000 198.743000 184.567000 246.603000 212.718000 271.995000 250.664000 1.486486 17.276387
Gene:AT1G01050 At180 | At207 | At261 | At290 TATA TATATACA | ATATATAC | CATATATA | TCATATAT 26.5 | 27.5 | 28.5 | 29.5 TAIR9 TAIR:At1g01050 Chr1 33147 | 33148 | 33149 | 33150 30 | 31 | 32 | 33 33140 | 33141 | 33142 | 33143 23 | 24 | 25 | 26 - 33117 447 32670 261579_at Diurnal_Condition:LIGHT5_HIF138-13 23 0.857290 1915.000000 619.000000 784.000000 1065.000000 1254.000000 1262.000000 1959.650000 593.606000 772.441000 1078.280000 1356.120000 1268.610000 21.566831 212.918553
Gene:AT1G01070 At153 TATA ATATAGAG 26.5 TAIR9 TAIR:At1g01070 Chr1 40891 30 40884 23 - 40861 264 40597 261576_at Diurnal_Condition:LIGHT5_HIF138-13 16 0.902119 8.000000 7.000000 9.000000 7.000000 11.000000 7.000000 8.297800 7.576380 8.225920 7.525810 11.140700 6.988500 2.938730 0.434696
Gene:AT2G26560 At227 | At231 | At281 | At304 TATA TATAAATA | CTATAAAT | CCTATAAA | TCCTATAA 27.5 | 28.5 | 29.5 | 30.5 TAIR9 TAIR:At2g26560 Chr2 11295837 | 11295838 | 11295839 | 11295840 31 | 32 | 33 | 34 11295830 | 11295831 | 11295832 | 11295833 24 | 25 | 26 | 27 - 11295806 98 11295708 245038_at Diurnal_Condition:LIGHT5_HIF138-13 8 0.995523 9.000000 14.000000 75.000000 12.000000 11.000000 8.000000 8.817500 14.645500 80.081900 12.552400 10.853700 7.745300 1.998712 12.174997
Gene:AT1G01010 At708 | At121 | At050 Y CTTCCTCC | CCTCCCTC | CTCCCTCC 45.5 | 42.5 | 41.5 TAIR9 TAIR:At1g01010 Chr1 3619 | 3622 | 3623 -49 | -46 | -45 3626 | 3629 | 3630 -42 | -39 | -38 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_HIF138-13 6 0.741880 10.000000 11.000000 11.000000 11.000000 10.000000 10.000000 10.930200 11.290800 10.140500 10.524900 9.921600 9.024980 0.457924 0.325997
Gene:AT1G01050 At033 | At026 | At006 Y TCTCTCCC | TTCTCTCC | TTTCTCTC 20.5 | 19.5 | 18.5 TAIR9 TAIR:At1g01050 Chr1 33100 | 33101 | 33102 -17 | -16 | -15 33093 | 33094 | 33095 -24 | -23 | -22 - 33117 447 32670 261579_at Diurnal_Condition:LIGHT5_HIF138-13 23 0.857290 1915.000000 619.000000 784.000000 1065.000000 1254.000000 1262.000000 1959.650000 593.606000 772.441000 1078.280000 1356.120000 1268.610000 21.566831 212.918553
Gene:AT1G01060 At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At066 | At713 | At085 | At088 | At715 Y TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | CCTTCTTC | TCCTTCTT | TTCCTTCT | CTTCCTTC | TCTTCCTT 39.5 | 38.5 | 37.5 | 36.5 | 35.5 | 34.5 | 33.5 | 32.5 | 31.5 | 30.5 | 29.5 | 28.5 | 27.5 | 26.5 | 25.5 | 24.5 | 23.5 | 22.5 | 21.5 | 20.5 | 19.5 | 18.5 | 17.5 | 16.5 | 15.5 | 14.5 | 13.5 | 12.5 | 11.5 | 10.5 | 9.5 | 8.5 | 7.5 | 6.5 | 5.5 TAIR9 TAIR:At1g01060 Chr1 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 | 37771 | 37772 | 37773 | 37774 | 37775 | 37776 | 37777 -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 | -8 | -7 | -6 | -5 | -4 | -3 | -2 37736 | 37737 | 37738 | 37739 | 37740 | 37741 | 37742 | 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 -43 | -42 | -41 | -40 | -39 | -38 | -37 | -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_HIF138-13 0 0.994051 2931.000000 273.000000 9.000000 7.000000 8.000000 205.000000 2724.310000 263.199000 8.714710 6.932480 7.499720 195.727000 18.074740 507.866660
Gene:AT1G01060 At063 Y TCTTCTTC 14.5 TAIR9 TAIR:At1g01060 Chr1 37797 18 37790 11 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_HIF138-13 0 0.994051 2931.000000 273.000000 9.000000 7.000000 8.000000 205.000000 2724.310000 263.199000 8.714710 6.932480 7.499720 195.727000 18.074740 507.866660
Gene:AT1G01060 At042 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At075 | At083 | At040 | At009 Y CTTCTTCC | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | CTCTTCTT | TCTCTTCT | TTCTCTTC | CTTCTCTT 24.5 | 25.5 | 26.5 | 27.5 | 28.5 | 29.5 | 30.5 | 31.5 | 32.5 | 33.5 | 34.5 | 35.5 TAIR9 TAIR:At1g01060 Chr1 37807 | 37808 | 37809 | 37810 | 37811 | 37812 | 37813 | 37814 | 37815 | 37816 | 37817 | 37818 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 37800 | 37801 | 37802 | 37803 | 37804 | 37805 | 37806 | 37807 | 37808 | 37809 | 37810 | 37811 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_HIF138-13 0 0.994051 2931.000000 273.000000 9.000000 7.000000 8.000000 205.000000 2724.310000 263.199000 8.714710 6.932480 7.499720 195.727000 18.074740 507.866660
Gene:AT1G01080 At005 Y TTCTTCTC 8.5 TAIR9 TAIR:At1g01080 Chr1 46825 -5 46818 -12 - 46830 41 46789 261577_at Diurnal_Condition:LIGHT5_HIF138-13 11 0.913450 156.000000 201.000000 203.000000 249.000000 175.000000 174.000000 171.436000 190.655000 187.155000 266.401000 159.657000 187.121000 4.454508 15.772077
Gene:AT1G01090 At090 Y CTCTCTTT 29.5 TAIR9 TAIR:At1g01090 Chr1 49245 -26 49238 -33 - 49271 105 49166 261583_at Diurnal_Condition:LIGHT5_HIF138-13 23 0.933326 4189.000000 3599.000000 3255.000000 3082.000000 3488.000000 3784.000000 4412.820000 3869.950000 2966.200000 3262.010000 3627.480000 3948.110000 16.837071 278.648157
Gene:AT1G01090 At026 Y TTCTCTCC 10.5 TAIR9 TAIR:At1g01090 Chr1 49264 -7 49257 -14 - 49271 105 49166 261583_at Diurnal_Condition:LIGHT5_HIF138-13 23 0.933326 4189.000000 3599.000000 3255.000000 3082.000000 3488.000000 3784.000000 4412.820000 3869.950000 2966.200000 3262.010000 3627.480000 3948.110000 16.837071 278.648157
Gene:AT1G01090 At114 Y CCTCCTCT 12.5 TAIR9 TAIR:At1g01090 Chr1 49287 16 49280 9 - 49271 105 49166 261583_at Diurnal_Condition:LIGHT5_HIF138-13 23 0.933326 4189.000000 3599.000000 3255.000000 3082.000000 3488.000000 3784.000000 4412.820000 3869.950000 2966.200000 3262.010000 3627.480000 3948.110000 16.837071 278.648157
Gene:AT2G26500 At710 | At348 | At712 | At701 Y TCCTCCTT | CCTCCTTC | TCCTTCCT | CCTTCCTT 45.5 | 44.5 | 42.5 | 41.5 TAIR9 TAIR:At2g26500 Chr2 11270177 | 11270178 | 11270180 | 11270181 -49 | -48 | -46 | -45 11270184 | 11270185 | 11270187 | 11270188 -42 | -41 | -39 | -38 + 11270226 -144 11270370 245044_at Diurnal_Condition:LIGHT5_HIF138-13 20 0.545326 8019.000000 9306.000000 7821.000000 8705.000000 8486.000000 9761.000000 8094.890000 9265.300000 7978.210000 8947.510000 8213.830000 8917.500000 14.919492 100.759035
Gene:AT2G26500 At004 | At009 | At040 | At083 | At075 Y TCTTCTCT | CTTCTCTT | TTCTCTTC | TCTCTTCT | CTCTTCTT 25.5 | 24.5 | 23.5 | 22.5 | 21.5 TAIR9 TAIR:At2g26500 Chr2 11270197 | 11270198 | 11270199 | 11270200 | 11270201 -29 | -28 | -27 | -26 | -25 11270204 | 11270205 | 11270206 | 11270207 | 11270208 -22 | -21 | -20 | -19 | -18 + 11270226 -144 11270370 245044_at Diurnal_Condition:LIGHT5_HIF138-13 20 0.545326 8019.000000 9306.000000 7821.000000 8705.000000 8486.000000 9761.000000 8094.890000 9265.300000 7978.210000 8947.510000 8213.830000 8917.500000 14.919492 100.759035
Gene:AT2G26500 At020 | At717 | At060 Y CTTCTCCT | TTCTCCTT | CTCCTTTC 10.5 | 9.5 | 7.5 TAIR9 TAIR:At2g26500 Chr2 11270212 | 11270213 | 11270215 -14 | -13 | -11 11270219 | 11270220 | 11270222 -7 | -6 | -4 + 11270226 -144 11270370 245044_at Diurnal_Condition:LIGHT5_HIF138-13 20 0.545326 8019.000000 9306.000000 7821.000000 8705.000000 8486.000000 9761.000000 8094.890000 9265.300000 7978.210000 8947.510000 8213.830000 8917.500000 14.919492 100.759035
Gene:AT2G26500 At009 Y CTTCTCTT 14.5 TAIR9 TAIR:At2g26500 Chr2 11270237 11 11270244 18 + 11270226 -144 11270370 245044_at Diurnal_Condition:LIGHT5_HIF138-13 20 0.545326 8019.000000 9306.000000 7821.000000 8705.000000 8486.000000 9761.000000 8094.890000 9265.300000 7978.210000 8947.510000 8213.830000 8917.500000 14.919492 100.759035
Gene:AT2G26510 At004 | At009 Y TCTTCTCT | CTTCTCTT 33.5 | 34.5 TAIR9 TAIR:At2g26510 Chr2 11273999 | 11274000 30 | 31 11274006 | 11274007 37 | 38 + 11273969 -149 11274118 245046_at Diurnal_Condition:LIGHT5_HIF138-13 13 0.880506 120.000000 188.000000 339.000000 277.000000 244.000000 247.000000 113.818000 177.173000 325.431000 264.654000 250.018000 246.859000 5.698945 38.247442
Gene:AT2G26530 At005 | At051 | At066 Y TTCTTCTC | CTTCTTCT | CCTTCTTC 19.5 | 20.5 | 21.5 TAIR9 TAIR:At2g26530 Chr2 11284041 | 11284042 | 11284043 23 | 24 | 25 11284034 | 11284035 | 11284036 16 | 17 | 18 - 11284018 29 11283989 245041_at Diurnal_Condition:LIGHT5_HIF138-13 7 0.990602 6.000000 12.000000 20.000000 6.000000 7.000000 6.000000 6.251890 12.978500 21.985500 5.483320 6.657200 6.519420 0.881938 3.023819
Gene:AT2G26580 At705 | At079 | At035 Y CTCTCCTT | CCTCTCCT | TCCTCTCC 41.5 | 40.5 | 39.5 TAIR9 TAIR:At2g26580 Chr2 11306971 | 11306972 | 11306973 -38 | -37 | -36 11306964 | 11306965 | 11306966 -45 | -44 | -43 - 11307009 270 11306739 245029_at Diurnal_Condition:LIGHT5_HIF138-13 9 0.973506 83.000000 190.000000 189.000000 216.000000 137.000000 88.000000 80.482500 204.726000 200.909000 217.564000 131.057000 91.582200 3.126886 35.596380
Gene:AT2G26590 At026 | At006 | At008 | At007 Y TTCTCTCC | TTTCTCTC | CTTTCTCT | TCTTTCTC 19.5 | 18.5 | 17.5 | 16.5 TAIR9 TAIR:At2g26590 Chr2 11315061 | 11315062 | 11315063 | 11315064 -16 | -15 | -14 | -13 11315054 | 11315055 | 11315056 | 11315057 -23 | -22 | -21 | -20 - 11315077 360 11314717 245045_at Diurnal_Condition:LIGHT5_HIF138-13 18 0.850960 200.000000 196.000000 235.000000 196.000000 288.000000 273.000000 198.743000 184.567000 246.603000 212.718000 271.995000 250.664000 1.486486 17.276387
Gene:AT1G01010 At723 | At728 | At722 GA CGAGAGAG | GAGAGAGA | AGAGAGAT 32.5 | 33.5 | 34.5 TAIR9 TAIR:At1g01010 Chr1 3697 | 3698 | 3699 29 | 30 | 31 3704 | 3705 | 3706 36 | 37 | 38 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_HIF138-13 6 0.741880 10.000000 11.000000 11.000000 11.000000 10.000000 10.000000 10.930200 11.290800 10.140500 10.524900 9.921600 9.024980 0.457924 0.325997
Gene:AT1G01070 At730 | At722 | At728 | At721 | At731 GA GAGAGATA | AGAGAGAT | GAGAGAGA | AGAGAGAG | TAGAGAGA 19.5 | 20.5 | 21.5 | 22.5 | 23.5 TAIR9 TAIR:At1g01070 Chr1 40884 | 40885 | 40886 | 40887 | 40888 23 | 24 | 25 | 26 | 27 40877 | 40878 | 40879 | 40880 | 40881 16 | 17 | 18 | 19 | 20 - 40861 264 40597 261576_at Diurnal_Condition:LIGHT5_HIF138-13 16 0.902119 8.000000 7.000000 9.000000 7.000000 11.000000 7.000000 8.297800 7.576380 8.225920 7.525810 11.140700 6.988500 2.938730 0.434696
Gene:AT2G26570 At734 | At721 | At728 | At719 GA AAGAGAGA | AGAGAGAG | GAGAGAGA | AGAGAGAA 11.5 | 10.5 | 9.5 | 8.5 TAIR9 TAIR:At2g26570 Chr2 11299018 | 11299019 | 11299020 | 11299021 -15 | -14 | -13 | -12 11299025 | 11299026 | 11299027 | 11299028 -8 | -7 | -6 | -5 + 11299033 -532 11299565 245028_at Diurnal_Condition:LIGHT5_HIF138-13 8 0.655340 109.000000 71.000000 106.000000 115.000000 105.000000 67.000000 117.194000 66.166200 99.528300 117.509000 103.303000 61.679400 5.765009 6.705005
Gene:AT2G26570 At730 GA GAGAGATA 28.5 TAIR9 TAIR:At2g26570 Chr2 11299058 25 11299065 32 + 11299033 -532 11299565 245028_at Diurnal_Condition:LIGHT5_HIF138-13 8 0.655340 109.000000 71.000000 106.000000 115.000000 105.000000 67.000000 117.194000 66.166200 99.528300 117.509000 103.303000 61.679400 5.765009 6.705005
* Row count is limited to 100.