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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
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#LINK
#lang en
#attribution_name Koro NISHIKATA
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PPDB_LIGHT5_znknOX
#download_from http://linkdata.org/work/rdf1s289i
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s219i/Octamer_elements.html#
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp TAIR gene chromosome position start position start from TSS peak position end position end from TSS peak strand sequence TSS peak position TSS peak position from Initiation codon Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd string:en string:en string:en float string:en string:en string:en integer integer integer integer string:en string:en integer integer string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 TAIR:At1g01010 Chr1 3455 | 3456 -213 | -212 3462 | 3463 -206 | -205 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_znknOX 22 0.872551 13.000000 9.000000 10.000000 9.000000 11.000000 15.000000 12.343600 8.535000 10.875400 9.413020 11.033000 13.599700 21.406043 1.133559
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 TAIR:At1g01010 Chr1 3535 | 3536 | 3537 -133 | -132 | -131 3542 | 3543 | 3544 -126 | -125 | -124 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_znknOX 22 0.872551 13.000000 9.000000 10.000000 9.000000 11.000000 15.000000 12.343600 8.535000 10.875400 9.413020 11.033000 13.599700 21.406043 1.133559
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 TAIR:At1g01010 Chr1 3601 -67 3608 -60 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_znknOX 22 0.872551 13.000000 9.000000 10.000000 9.000000 11.000000 15.000000 12.343600 8.535000 10.875400 9.413020 11.033000 13.599700 21.406043 1.133559
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 TAIR:At1g01060 Chr1 37913 134 37906 127 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_znknOX 0 0.987758 2691.000000 105.000000 6.000000 7.000000 7.000000 459.000000 2742.360000 115.420000 6.384710 7.484070 7.244670 417.828000 17.635397 498.451139
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 TAIR:At1g01060 Chr1 37950 | 37951 | 37952 | 37953 171 | 172 | 173 | 174 37943 | 37944 | 37945 | 37946 164 | 165 | 166 | 167 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_znknOX 0 0.987758 2691.000000 105.000000 6.000000 7.000000 7.000000 459.000000 2742.360000 115.420000 6.384710 7.484070 7.244670 417.828000 17.635397 498.451139
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 TAIR:At1g01070 Chr1 40933 72 40926 65 - 40861 264 40597 261576_at Diurnal_Condition:LIGHT5_znknOX 23 0.911080 19.000000 12.000000 13.000000 10.000000 8.000000 12.000000 20.592700 10.916600 11.962500 9.304130 8.247230 12.390300 19.002781 2.013760
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 TAIR:At1g01080 Chr1 46877 | 46878 | 46879 | 46880 | 46881 47 | 48 | 49 | 50 | 51 46870 | 46871 | 46872 | 46873 | 46874 40 | 41 | 42 | 43 | 44 - 46830 41 46789 261577_at Diurnal_Condition:LIGHT5_znknOX 10 0.951561 164.000000 167.000000 249.000000 249.000000 130.000000 162.000000 180.376000 171.696000 269.874000 248.014000 134.878000 163.804000 2.837558 26.150992
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 TAIR:At1g01080 Chr1 46978 | 46979 | 46980 | 46981 | 46982 148 | 149 | 150 | 151 | 152 46971 | 46972 | 46973 | 46974 | 46975 141 | 142 | 143 | 144 | 145 - 46830 41 46789 261577_at Diurnal_Condition:LIGHT5_znknOX 10 0.951561 164.000000 167.000000 249.000000 249.000000 130.000000 162.000000 180.376000 171.696000 269.874000 248.014000 134.878000 163.804000 2.837558 26.150992
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 TAIR:At1g01080 Chr1 47119 | 47120 | 47121 | 47122 289 | 290 | 291 | 292 47112 | 47113 | 47114 | 47115 282 | 283 | 284 | 285 - 46830 41 46789 261577_at Diurnal_Condition:LIGHT5_znknOX 10 0.951561 164.000000 167.000000 249.000000 249.000000 130.000000 162.000000 180.376000 171.696000 269.874000 248.014000 134.878000 163.804000 2.837558 26.150992
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 TAIR:At1g01090 Chr1 49365 94 49358 87 - 49271 105 49166 261583_at Diurnal_Condition:LIGHT5_znknOX 22 0.893947 3852.000000 3396.000000 3126.000000 2972.000000 3116.000000 4370.000000 3855.420000 3312.330000 3437.600000 2790.600000 3149.040000 4059.880000 16.554543 277.966657
Gene:AT2G26530 OctamerElement:AtREG473 | OctamerElement:AtREG652 REG CGGTTTAA | ACGGTTTA 77.5 | 78.5 TAIR9 TAIR:At2g26530 Chr2 11284099 | 11284100 81 | 82 11284092 | 11284093 74 | 75 - 11284018 29 11283989 245041_at Diurnal_Condition:LIGHT5_znknOX 10 0.794808 8.000000 6.000000 13.000000 12.000000 6.000000 11.000000 8.587270 5.602770 13.635700 11.159900 6.163380 10.345200 4.444754 0.861984
Gene:AT2G26530 OctamerElement:AtREG571 | OctamerElement:AtREG581 | OctamerElement:AtREG372 | OctamerElement:AtREG386 REG TGGGCTAA | ATGGGCTA | AATGGGCT | AAATGGGC 251.5 | 252.5 | 253.5 | 254.5 TAIR9 TAIR:At2g26530 Chr2 11284273 | 11284274 | 11284275 | 11284276 255 | 256 | 257 | 258 11284266 | 11284267 | 11284268 | 11284269 248 | 249 | 250 | 251 - 11284018 29 11283989 245041_at Diurnal_Condition:LIGHT5_znknOX 10 0.794808 8.000000 6.000000 13.000000 12.000000 6.000000 11.000000 8.587270 5.602770 13.635700 11.159900 6.163380 10.345200 4.444754 0.861984
Gene:AT2G26570 OctamerElement:AtREG494 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 REG CCGGGTCG | CGGGTCGG | GGGTCGGG | GGTCGGGT 273.5 | 272.5 | 271.5 | 270.5 TAIR9 TAIR:At2g26570 Chr2 11298756 | 11298757 | 11298758 | 11298759 -277 | -276 | -275 | -274 11298763 | 11298764 | 11298765 | 11298766 -270 | -269 | -268 | -267 + 11299033 -532 11299565 245028_at Diurnal_Condition:LIGHT5_znknOX 3 0.848008 81.000000 58.000000 70.000000 53.000000 34.000000 63.000000 84.195600 58.305800 72.281600 50.172000 34.046700 60.188500 20.485724 8.023754
Gene:AT2G26570 OctamerElement:AtREG513 REG ACGTGGAC 134.5 TAIR9 TAIR:At2g26570 Chr2 11298895 -138 11298902 -131 + 11299033 -532 11299565 245028_at Diurnal_Condition:LIGHT5_znknOX 3 0.848008 81.000000 58.000000 70.000000 53.000000 34.000000 63.000000 84.195600 58.305800 72.281600 50.172000 34.046700 60.188500 20.485724 8.023754
Gene:AT2G26590 OctamerElement:AtREG525 | OctamerElement:AtREG407 | OctamerElement:AtREG402 REG TGGGCTTG | TTGGGCTT | ATTGGGCT 107.5 | 108.5 | 109.5 TAIR9 TAIR:At2g26590 Chr2 11315188 | 11315189 | 11315190 111 | 112 | 113 11315181 | 11315182 | 11315183 104 | 105 | 106 - 11315077 360 11314717 245045_at Diurnal_Condition:LIGHT5_znknOX 20 0.915670 309.000000 277.000000 247.000000 256.000000 327.000000 349.000000 285.340000 292.805000 244.490000 246.382000 320.090000 337.251000 14.173613 23.305944
Gene:AT2G26590 OctamerElement:AtREG549 REG TAAAAGCC 135.5 TAIR9 TAIR:At2g26590 Chr2 11315216 139 11315209 132 - 11315077 360 11314717 245045_at Diurnal_Condition:LIGHT5_znknOX 20 0.915670 309.000000 277.000000 247.000000 256.000000 327.000000 349.000000 285.340000 292.805000 244.490000 246.382000 320.090000 337.251000 14.173613 23.305944
Gene:AT2G26590 OctamerElement:AtREG578 | OctamerElement:AtREG483 | OctamerElement:AtREG606 REG ACGTCATC | CACGTCAT | TGTCACGT 271.5 | 272.5 | 275.5 TAIR9 TAIR:At2g26590 Chr2 11315352 | 11315353 | 11315356 275 | 276 | 279 11315345 | 11315346 | 11315349 268 | 269 | 272 - 11315077 360 11314717 245045_at Diurnal_Condition:LIGHT5_znknOX 20 0.915670 309.000000 277.000000 247.000000 256.000000 327.000000 349.000000 285.340000 292.805000 244.490000 246.382000 320.090000 337.251000 14.173613 23.305944
Gene:AT1G01050 At180 | At207 | At261 | At290 TATA TATATACA | ATATATAC | CATATATA | TCATATAT 26.5 | 27.5 | 28.5 | 29.5 TAIR9 TAIR:At1g01050 Chr1 33147 | 33148 | 33149 | 33150 30 | 31 | 32 | 33 33140 | 33141 | 33142 | 33143 23 | 24 | 25 | 26 - 33117 447 32670 261579_at Diurnal_Condition:LIGHT5_znknOX 22 0.866936 2047.000000 707.000000 742.000000 1209.000000 1215.000000 1607.000000 1879.650000 725.208000 789.419000 1172.390000 1292.450000 1677.220000 21.495356 257.498318
Gene:AT1G01070 At153 TATA ATATAGAG 26.5 TAIR9 TAIR:At1g01070 Chr1 40891 30 40884 23 - 40861 264 40597 261576_at Diurnal_Condition:LIGHT5_znknOX 23 0.911080 19.000000 12.000000 13.000000 10.000000 8.000000 12.000000 20.592700 10.916600 11.962500 9.304130 8.247230 12.390300 19.002781 2.013760
Gene:AT2G26560 At227 | At231 | At281 | At304 TATA TATAAATA | CTATAAAT | CCTATAAA | TCCTATAA 27.5 | 28.5 | 29.5 | 30.5 TAIR9 TAIR:At2g26560 Chr2 11295837 | 11295838 | 11295839 | 11295840 31 | 32 | 33 | 34 11295830 | 11295831 | 11295832 | 11295833 24 | 25 | 26 | 27 - 11295806 98 11295708 245038_at Diurnal_Condition:LIGHT5_znknOX 8 0.958152 10.000000 10.000000 30.000000 12.000000 13.000000 15.000000 10.273100 9.105210 28.871700 12.772800 12.817000 15.696400 3.315489 2.396493
Gene:AT1G01010 At708 | At121 | At050 Y CTTCCTCC | CCTCCCTC | CTCCCTCC 45.5 | 42.5 | 41.5 TAIR9 TAIR:At1g01010 Chr1 3619 | 3622 | 3623 -49 | -46 | -45 3626 | 3629 | 3630 -42 | -39 | -38 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_znknOX 22 0.872551 13.000000 9.000000 10.000000 9.000000 11.000000 15.000000 12.343600 8.535000 10.875400 9.413020 11.033000 13.599700 21.406043 1.133559
Gene:AT1G01050 At033 | At026 | At006 Y TCTCTCCC | TTCTCTCC | TTTCTCTC 20.5 | 19.5 | 18.5 TAIR9 TAIR:At1g01050 Chr1 33100 | 33101 | 33102 -17 | -16 | -15 33093 | 33094 | 33095 -24 | -23 | -22 - 33117 447 32670 261579_at Diurnal_Condition:LIGHT5_znknOX 22 0.866936 2047.000000 707.000000 742.000000 1209.000000 1215.000000 1607.000000 1879.650000 725.208000 789.419000 1172.390000 1292.450000 1677.220000 21.495356 257.498318
Gene:AT1G01060 At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At066 | At713 | At085 | At088 | At715 Y TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | CCTTCTTC | TCCTTCTT | TTCCTTCT | CTTCCTTC | TCTTCCTT 39.5 | 38.5 | 37.5 | 36.5 | 35.5 | 34.5 | 33.5 | 32.5 | 31.5 | 30.5 | 29.5 | 28.5 | 27.5 | 26.5 | 25.5 | 24.5 | 23.5 | 22.5 | 21.5 | 20.5 | 19.5 | 18.5 | 17.5 | 16.5 | 15.5 | 14.5 | 13.5 | 12.5 | 11.5 | 10.5 | 9.5 | 8.5 | 7.5 | 6.5 | 5.5 TAIR9 TAIR:At1g01060 Chr1 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 | 37771 | 37772 | 37773 | 37774 | 37775 | 37776 | 37777 -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 | -8 | -7 | -6 | -5 | -4 | -3 | -2 37736 | 37737 | 37738 | 37739 | 37740 | 37741 | 37742 | 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 -43 | -42 | -41 | -40 | -39 | -38 | -37 | -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_znknOX 0 0.987758 2691.000000 105.000000 6.000000 7.000000 7.000000 459.000000 2742.360000 115.420000 6.384710 7.484070 7.244670 417.828000 17.635397 498.451139
Gene:AT1G01060 At063 Y TCTTCTTC 14.5 TAIR9 TAIR:At1g01060 Chr1 37797 18 37790 11 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_znknOX 0 0.987758 2691.000000 105.000000 6.000000 7.000000 7.000000 459.000000 2742.360000 115.420000 6.384710 7.484070 7.244670 417.828000 17.635397 498.451139
Gene:AT1G01060 At042 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At075 | At083 | At040 | At009 Y CTTCTTCC | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | CTCTTCTT | TCTCTTCT | TTCTCTTC | CTTCTCTT 24.5 | 25.5 | 26.5 | 27.5 | 28.5 | 29.5 | 30.5 | 31.5 | 32.5 | 33.5 | 34.5 | 35.5 TAIR9 TAIR:At1g01060 Chr1 37807 | 37808 | 37809 | 37810 | 37811 | 37812 | 37813 | 37814 | 37815 | 37816 | 37817 | 37818 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 37800 | 37801 | 37802 | 37803 | 37804 | 37805 | 37806 | 37807 | 37808 | 37809 | 37810 | 37811 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 - 37779 718 37061 261569_at Diurnal_Condition:LIGHT5_znknOX 0 0.987758 2691.000000 105.000000 6.000000 7.000000 7.000000 459.000000 2742.360000 115.420000 6.384710 7.484070 7.244670 417.828000 17.635397 498.451139
Gene:AT1G01080 At005 Y TTCTTCTC 8.5 TAIR9 TAIR:At1g01080 Chr1 46825 -5 46818 -12 - 46830 41 46789 261577_at Diurnal_Condition:LIGHT5_znknOX 10 0.951561 164.000000 167.000000 249.000000 249.000000 130.000000 162.000000 180.376000 171.696000 269.874000 248.014000 134.878000 163.804000 2.837558 26.150992
Gene:AT1G01090 At090 Y CTCTCTTT 29.5 TAIR9 TAIR:At1g01090 Chr1 49245 -26 49238 -33 - 49271 105 49166 261583_at Diurnal_Condition:LIGHT5_znknOX 22 0.893947 3852.000000 3396.000000 3126.000000 2972.000000 3116.000000 4370.000000 3855.420000 3312.330000 3437.600000 2790.600000 3149.040000 4059.880000 16.554543 277.966657
Gene:AT1G01090 At026 Y TTCTCTCC 10.5 TAIR9 TAIR:At1g01090 Chr1 49264 -7 49257 -14 - 49271 105 49166 261583_at Diurnal_Condition:LIGHT5_znknOX 22 0.893947 3852.000000 3396.000000 3126.000000 2972.000000 3116.000000 4370.000000 3855.420000 3312.330000 3437.600000 2790.600000 3149.040000 4059.880000 16.554543 277.966657
Gene:AT1G01090 At114 Y CCTCCTCT 12.5 TAIR9 TAIR:At1g01090 Chr1 49287 16 49280 9 - 49271 105 49166 261583_at Diurnal_Condition:LIGHT5_znknOX 22 0.893947 3852.000000 3396.000000 3126.000000 2972.000000 3116.000000 4370.000000 3855.420000 3312.330000 3437.600000 2790.600000 3149.040000 4059.880000 16.554543 277.966657
Gene:AT2G26500 At710 | At348 | At712 | At701 Y TCCTCCTT | CCTCCTTC | TCCTTCCT | CCTTCCTT 45.5 | 44.5 | 42.5 | 41.5 TAIR9 TAIR:At2g26500 Chr2 11270177 | 11270178 | 11270180 | 11270181 -49 | -48 | -46 | -45 11270184 | 11270185 | 11270187 | 11270188 -42 | -41 | -39 | -38 + 11270226 -144 11270370 245044_at Diurnal_Condition:LIGHT5_znknOX 19 0.695422 9586.000000 8678.000000 8140.000000 9148.000000 9436.000000 8447.000000 9913.670000 8249.370000 7629.780000 8432.270000 10303.900000 8888.870000 13.258097 333.950651
Gene:AT2G26500 At004 | At009 | At040 | At083 | At075 Y TCTTCTCT | CTTCTCTT | TTCTCTTC | TCTCTTCT | CTCTTCTT 25.5 | 24.5 | 23.5 | 22.5 | 21.5 TAIR9 TAIR:At2g26500 Chr2 11270197 | 11270198 | 11270199 | 11270200 | 11270201 -29 | -28 | -27 | -26 | -25 11270204 | 11270205 | 11270206 | 11270207 | 11270208 -22 | -21 | -20 | -19 | -18 + 11270226 -144 11270370 245044_at Diurnal_Condition:LIGHT5_znknOX 19 0.695422 9586.000000 8678.000000 8140.000000 9148.000000 9436.000000 8447.000000 9913.670000 8249.370000 7629.780000 8432.270000 10303.900000 8888.870000 13.258097 333.950651
Gene:AT2G26500 At020 | At717 | At060 Y CTTCTCCT | TTCTCCTT | CTCCTTTC 10.5 | 9.5 | 7.5 TAIR9 TAIR:At2g26500 Chr2 11270212 | 11270213 | 11270215 -14 | -13 | -11 11270219 | 11270220 | 11270222 -7 | -6 | -4 + 11270226 -144 11270370 245044_at Diurnal_Condition:LIGHT5_znknOX 19 0.695422 9586.000000 8678.000000 8140.000000 9148.000000 9436.000000 8447.000000 9913.670000 8249.370000 7629.780000 8432.270000 10303.900000 8888.870000 13.258097 333.950651
Gene:AT2G26500 At009 Y CTTCTCTT 14.5 TAIR9 TAIR:At2g26500 Chr2 11270237 11 11270244 18 + 11270226 -144 11270370 245044_at Diurnal_Condition:LIGHT5_znknOX 19 0.695422 9586.000000 8678.000000 8140.000000 9148.000000 9436.000000 8447.000000 9913.670000 8249.370000 7629.780000 8432.270000 10303.900000 8888.870000 13.258097 333.950651
Gene:AT2G26510 At004 | At009 Y TCTTCTCT | CTTCTCTT 33.5 | 34.5 TAIR9 TAIR:At2g26510 Chr2 11273999 | 11274000 30 | 31 11274006 | 11274007 37 | 38 + 11273969 -149 11274118 245046_at Diurnal_Condition:LIGHT5_znknOX 14 0.841898 248.000000 234.000000 327.000000 303.000000 291.000000 350.000000 238.592000 247.713000 302.658000 311.232000 268.700000 345.437000 8.863406 15.227204
Gene:AT2G26530 At005 | At051 | At066 Y TTCTTCTC | CTTCTTCT | CCTTCTTC 19.5 | 20.5 | 21.5 TAIR9 TAIR:At2g26530 Chr2 11284041 | 11284042 | 11284043 23 | 24 | 25 11284034 | 11284035 | 11284036 16 | 17 | 18 - 11284018 29 11283989 245041_at Diurnal_Condition:LIGHT5_znknOX 10 0.794808 8.000000 6.000000 13.000000 12.000000 6.000000 11.000000 8.587270 5.602770 13.635700 11.159900 6.163380 10.345200 4.444754 0.861984
Gene:AT2G26580 At705 | At079 | At035 Y CTCTCCTT | CCTCTCCT | TCCTCTCC 41.5 | 40.5 | 39.5 TAIR9 TAIR:At2g26580 Chr2 11306971 | 11306972 | 11306973 -38 | -37 | -36 11306964 | 11306965 | 11306966 -45 | -44 | -43 - 11307009 270 11306739 245029_at Diurnal_Condition:LIGHT5_znknOX 10 0.970233 95.000000 99.000000 180.000000 158.000000 91.000000 109.000000 103.503000 97.413000 186.600000 169.497000 90.205700 111.670000 3.621419 19.938782
Gene:AT2G26590 At026 | At006 | At008 | At007 Y TTCTCTCC | TTTCTCTC | CTTTCTCT | TCTTTCTC 19.5 | 18.5 | 17.5 | 16.5 TAIR9 TAIR:At2g26590 Chr2 11315061 | 11315062 | 11315063 | 11315064 -16 | -15 | -14 | -13 11315054 | 11315055 | 11315056 | 11315057 -23 | -22 | -21 | -20 - 11315077 360 11314717 245045_at Diurnal_Condition:LIGHT5_znknOX 20 0.915670 309.000000 277.000000 247.000000 256.000000 327.000000 349.000000 285.340000 292.805000 244.490000 246.382000 320.090000 337.251000 14.173613 23.305944
Gene:AT1G01010 At723 | At728 | At722 GA CGAGAGAG | GAGAGAGA | AGAGAGAT 32.5 | 33.5 | 34.5 TAIR9 TAIR:At1g01010 Chr1 3697 | 3698 | 3699 29 | 30 | 31 3704 | 3705 | 3706 36 | 37 | 38 + 3668 -92 3760 261585_at Diurnal_Condition:LIGHT5_znknOX 22 0.872551 13.000000 9.000000 10.000000 9.000000 11.000000 15.000000 12.343600 8.535000 10.875400 9.413020 11.033000 13.599700 21.406043 1.133559
Gene:AT1G01070 At730 | At722 | At728 | At721 | At731 GA GAGAGATA | AGAGAGAT | GAGAGAGA | AGAGAGAG | TAGAGAGA 19.5 | 20.5 | 21.5 | 22.5 | 23.5 TAIR9 TAIR:At1g01070 Chr1 40884 | 40885 | 40886 | 40887 | 40888 23 | 24 | 25 | 26 | 27 40877 | 40878 | 40879 | 40880 | 40881 16 | 17 | 18 | 19 | 20 - 40861 264 40597 261576_at Diurnal_Condition:LIGHT5_znknOX 23 0.911080 19.000000 12.000000 13.000000 10.000000 8.000000 12.000000 20.592700 10.916600 11.962500 9.304130 8.247230 12.390300 19.002781 2.013760
Gene:AT2G26570 At734 | At721 | At728 | At719 GA AAGAGAGA | AGAGAGAG | GAGAGAGA | AGAGAGAA 11.5 | 10.5 | 9.5 | 8.5 TAIR9 TAIR:At2g26570 Chr2 11299018 | 11299019 | 11299020 | 11299021 -15 | -14 | -13 | -12 11299025 | 11299026 | 11299027 | 11299028 -8 | -7 | -6 | -5 + 11299033 -532 11299565 245028_at Diurnal_Condition:LIGHT5_znknOX 3 0.848008 81.000000 58.000000 70.000000 53.000000 34.000000 63.000000 84.195600 58.305800 72.281600 50.172000 34.046700 60.188500 20.485724 8.023754
Gene:AT2G26570 At730 GA GAGAGATA 28.5 TAIR9 TAIR:At2g26570 Chr2 11299058 25 11299065 32 + 11299033 -532 11299565 245028_at Diurnal_Condition:LIGHT5_znknOX 3 0.848008 81.000000 58.000000 70.000000 53.000000 34.000000 63.000000 84.195600 58.305800 72.281600 50.172000 34.046700 60.188500 20.485724 8.023754
* Row count is limited to 100.