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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
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#LINK
#lang en
#attribution_name Koro NISHIKATA
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PPDB_LL12_LDHH
#download_from http://linkdata.org/work/rdf1s289i
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s219i/Octamer_elements.html#
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp TAIR gene chromosome position start position start from TSS peak position end position end from TSS peak strand sequence TSS peak position TSS peak position from Initiation codon Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd string:en string:en string:en float string:en string:en string:en integer integer integer integer string:en string:en integer integer string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 TAIR:At1g01010 Chr1 3455 | 3456 -213 | -212 3462 | 3463 -206 | -205 + 3668 -92 3760 261585_at Circadian_Condition:LL12_LDHH 10 0.571267 7.786760 8.526680 12.474300 9.710990 9.913910 11.306100 8.295340 15.346400 10.366300 11.792900 7.774930 10.542300 10.370006 0.568935
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 TAIR:At1g01010 Chr1 3535 | 3536 | 3537 -133 | -132 | -131 3542 | 3543 | 3544 -126 | -125 | -124 + 3668 -92 3760 261585_at Circadian_Condition:LL12_LDHH 10 0.571267 7.786760 8.526680 12.474300 9.710990 9.913910 11.306100 8.295340 15.346400 10.366300 11.792900 7.774930 10.542300 10.370006 0.568935
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 TAIR:At1g01010 Chr1 3601 -67 3608 -60 + 3668 -92 3760 261585_at Circadian_Condition:LL12_LDHH 10 0.571267 7.786760 8.526680 12.474300 9.710990 9.913910 11.306100 8.295340 15.346400 10.366300 11.792900 7.774930 10.542300 10.370006 0.568935
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 TAIR:At1g01060 Chr1 37913 134 37906 127 - 37779 718 37061 261569_at Circadian_Condition:LL12_LDHH 1 0.921307 554.284000 484.413000 52.300400 12.842500 20.930900 203.117000 485.217000 260.745000 80.974000 20.080200 90.130300 214.936000 18.777304 124.741965
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 TAIR:At1g01060 Chr1 37950 | 37951 | 37952 | 37953 171 | 172 | 173 | 174 37943 | 37944 | 37945 | 37946 164 | 165 | 166 | 167 - 37779 718 37061 261569_at Circadian_Condition:LL12_LDHH 1 0.921307 554.284000 484.413000 52.300400 12.842500 20.930900 203.117000 485.217000 260.745000 80.974000 20.080200 90.130300 214.936000 18.777304 124.741965
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 TAIR:At1g01070 Chr1 40933 72 40926 65 - 40861 264 40597 261576_at Circadian_Condition:LL12_LDHH 4 0.842840 17.847200 17.154800 13.487300 16.342000 7.982460 11.123500 11.802000 20.348400 15.978100 13.556700 8.873000 9.229270 23.194360 2.196444
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 TAIR:At1g01080 Chr1 46877 | 46878 | 46879 | 46880 | 46881 47 | 48 | 49 | 50 | 51 46870 | 46871 | 46872 | 46873 | 46874 40 | 41 | 42 | 43 | 44 - 46830 41 46789 261577_at Circadian_Condition:LL12_LDHH 17 0.614213 260.319000 163.600000 173.628000 218.322000 166.995000 181.444000 159.371000 120.747000 174.413000 283.274000 212.768000 248.117000 2.007209 14.760776
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 TAIR:At1g01080 Chr1 46978 | 46979 | 46980 | 46981 | 46982 148 | 149 | 150 | 151 | 152 46971 | 46972 | 46973 | 46974 | 46975 141 | 142 | 143 | 144 | 145 - 46830 41 46789 261577_at Circadian_Condition:LL12_LDHH 17 0.614213 260.319000 163.600000 173.628000 218.322000 166.995000 181.444000 159.371000 120.747000 174.413000 283.274000 212.768000 248.117000 2.007209 14.760776
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 TAIR:At1g01080 Chr1 47119 | 47120 | 47121 | 47122 289 | 290 | 291 | 292 47112 | 47113 | 47114 | 47115 282 | 283 | 284 | 285 - 46830 41 46789 261577_at Circadian_Condition:LL12_LDHH 17 0.614213 260.319000 163.600000 173.628000 218.322000 166.995000 181.444000 159.371000 120.747000 174.413000 283.274000 212.768000 248.117000 2.007209 14.760776
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 TAIR:At1g01090 Chr1 49365 94 49358 87 - 49271 105 49166 261583_at Circadian_Condition:LL12_LDHH 23 0.579996 1893.340000 1760.070000 1826.300000 1686.580000 1585.930000 1817.800000 1814.150000 1446.410000 1614.840000 1721.610000 1721.830000 1683.060000 19.772869 25.955911
Gene:AT2G26530 OctamerElement:AtREG473 | OctamerElement:AtREG652 REG CGGTTTAA | ACGGTTTA 77.5 | 78.5 TAIR9 TAIR:At2g26530 Chr2 11284099 | 11284100 81 | 82 11284092 | 11284093 74 | 75 - 11284018 29 11283989 245041_at Circadian_Condition:LL12_LDHH 5 0.868889 13.096200 19.979100 14.159400 10.551000 9.844280 7.549570 10.597500 15.122400 16.053000 9.529800 9.047460 10.307800 23.158426 2.112553
Gene:AT2G26530 OctamerElement:AtREG571 | OctamerElement:AtREG581 | OctamerElement:AtREG372 | OctamerElement:AtREG386 REG TGGGCTAA | ATGGGCTA | AATGGGCT | AAATGGGC 251.5 | 252.5 | 253.5 | 254.5 TAIR9 TAIR:At2g26530 Chr2 11284273 | 11284274 | 11284275 | 11284276 255 | 256 | 257 | 258 11284266 | 11284267 | 11284268 | 11284269 248 | 249 | 250 | 251 - 11284018 29 11283989 245041_at Circadian_Condition:LL12_LDHH 5 0.868889 13.096200 19.979100 14.159400 10.551000 9.844280 7.549570 10.597500 15.122400 16.053000 9.529800 9.047460 10.307800 23.158426 2.112553
Gene:AT2G26570 OctamerElement:AtREG494 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 REG CCGGGTCG | CGGGTCGG | GGGTCGGG | GGTCGGGT 273.5 | 272.5 | 271.5 | 270.5 TAIR9 TAIR:At2g26570 Chr2 11298756 | 11298757 | 11298758 | 11298759 -277 | -276 | -275 | -274 11298763 | 11298764 | 11298765 | 11298766 -270 | -269 | -268 | -267 + 11299033 -532 11299565 245028_at Circadian_Condition:LL12_LDHH 1 0.495856 295.779000 308.737000 212.088000 253.368000 248.640000 213.252000 246.342000 183.531000 243.855000 176.594000 196.464000 204.210000 20.165541 11.508954
Gene:AT2G26570 OctamerElement:AtREG513 REG ACGTGGAC 134.5 TAIR9 TAIR:At2g26570 Chr2 11298895 -138 11298902 -131 + 11299033 -532 11299565 245028_at Circadian_Condition:LL12_LDHH 1 0.495856 295.779000 308.737000 212.088000 253.368000 248.640000 213.252000 246.342000 183.531000 243.855000 176.594000 196.464000 204.210000 20.165541 11.508954
Gene:AT2G26590 OctamerElement:AtREG525 | OctamerElement:AtREG407 | OctamerElement:AtREG402 REG TGGGCTTG | TTGGGCTT | ATTGGGCT 107.5 | 108.5 | 109.5 TAIR9 TAIR:At2g26590 Chr2 11315188 | 11315189 | 11315190 111 | 112 | 113 11315181 | 11315182 | 11315183 104 | 105 | 106 - 11315077 360 11314717 245045_at Circadian_Condition:LL12_LDHH 4 0.565979 229.925000 235.943000 213.704000 200.884000 217.084000 217.737000 181.491000 227.623000 208.547000 217.929000 208.974000 214.032000 21.758803 2.425709
Gene:AT2G26590 OctamerElement:AtREG549 REG TAAAAGCC 135.5 TAIR9 TAIR:At2g26590 Chr2 11315216 139 11315209 132 - 11315077 360 11314717 245045_at Circadian_Condition:LL12_LDHH 4 0.565979 229.925000 235.943000 213.704000 200.884000 217.084000 217.737000 181.491000 227.623000 208.547000 217.929000 208.974000 214.032000 21.758803 2.425709
Gene:AT2G26590 OctamerElement:AtREG578 | OctamerElement:AtREG483 | OctamerElement:AtREG606 REG ACGTCATC | CACGTCAT | TGTCACGT 271.5 | 272.5 | 275.5 TAIR9 TAIR:At2g26590 Chr2 11315352 | 11315353 | 11315356 275 | 276 | 279 11315345 | 11315346 | 11315349 268 | 269 | 272 - 11315077 360 11314717 245045_at Circadian_Condition:LL12_LDHH 4 0.565979 229.925000 235.943000 213.704000 200.884000 217.084000 217.737000 181.491000 227.623000 208.547000 217.929000 208.974000 214.032000 21.758803 2.425709
Gene:AT1G01050 At180 | At207 | At261 | At290 TATA TATATACA | ATATATAC | CATATATA | TCATATAT 26.5 | 27.5 | 28.5 | 29.5 TAIR9 TAIR:At1g01050 Chr1 33147 | 33148 | 33149 | 33150 30 | 31 | 32 | 33 33140 | 33141 | 33142 | 33143 23 | 24 | 25 | 26 - 33117 447 32670 261579_at Circadian_Condition:LL12_LDHH 20 0.437990 689.501000 679.264000 674.102000 732.098000 667.431000 810.819000 651.177000 706.030000 666.541000 656.359000 693.760000 653.215000 22.879702 7.485132
Gene:AT1G01070 At153 TATA ATATAGAG 26.5 TAIR9 TAIR:At1g01070 Chr1 40891 30 40884 23 - 40861 264 40597 261576_at Circadian_Condition:LL12_LDHH 4 0.842840 17.847200 17.154800 13.487300 16.342000 7.982460 11.123500 11.802000 20.348400 15.978100 13.556700 8.873000 9.229270 23.194360 2.196444
Gene:AT2G26560 At227 | At231 | At281 | At304 TATA TATAAATA | CTATAAAT | CCTATAAA | TCCTATAA 27.5 | 28.5 | 29.5 | 30.5 TAIR9 TAIR:At2g26560 Chr2 11295837 | 11295838 | 11295839 | 11295840 31 | 32 | 33 | 34 11295830 | 11295831 | 11295832 | 11295833 24 | 25 | 26 | 27 - 11295806 98 11295708 245038_at Circadian_Condition:LL12_LDHH 7 0.505176 7.334920 8.827660 12.301500 5.284520 7.716720 11.341900 7.990930 10.976100 11.772600 10.863000 11.399600 10.934300 2.173842 0.212925
Gene:AT1G01010 At708 | At121 | At050 Y CTTCCTCC | CCTCCCTC | CTCCCTCC 45.5 | 42.5 | 41.5 TAIR9 TAIR:At1g01010 Chr1 3619 | 3622 | 3623 -49 | -46 | -45 3626 | 3629 | 3630 -42 | -39 | -38 + 3668 -92 3760 261585_at Circadian_Condition:LL12_LDHH 10 0.571267 7.786760 8.526680 12.474300 9.710990 9.913910 11.306100 8.295340 15.346400 10.366300 11.792900 7.774930 10.542300 10.370006 0.568935
Gene:AT1G01050 At033 | At026 | At006 Y TCTCTCCC | TTCTCTCC | TTTCTCTC 20.5 | 19.5 | 18.5 TAIR9 TAIR:At1g01050 Chr1 33100 | 33101 | 33102 -17 | -16 | -15 33093 | 33094 | 33095 -24 | -23 | -22 - 33117 447 32670 261579_at Circadian_Condition:LL12_LDHH 20 0.437990 689.501000 679.264000 674.102000 732.098000 667.431000 810.819000 651.177000 706.030000 666.541000 656.359000 693.760000 653.215000 22.879702 7.485132
Gene:AT1G01060 At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At066 | At713 | At085 | At088 | At715 Y TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | CCTTCTTC | TCCTTCTT | TTCCTTCT | CTTCCTTC | TCTTCCTT 39.5 | 38.5 | 37.5 | 36.5 | 35.5 | 34.5 | 33.5 | 32.5 | 31.5 | 30.5 | 29.5 | 28.5 | 27.5 | 26.5 | 25.5 | 24.5 | 23.5 | 22.5 | 21.5 | 20.5 | 19.5 | 18.5 | 17.5 | 16.5 | 15.5 | 14.5 | 13.5 | 12.5 | 11.5 | 10.5 | 9.5 | 8.5 | 7.5 | 6.5 | 5.5 TAIR9 TAIR:At1g01060 Chr1 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 | 37771 | 37772 | 37773 | 37774 | 37775 | 37776 | 37777 -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 | -8 | -7 | -6 | -5 | -4 | -3 | -2 37736 | 37737 | 37738 | 37739 | 37740 | 37741 | 37742 | 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 -43 | -42 | -41 | -40 | -39 | -38 | -37 | -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 - 37779 718 37061 261569_at Circadian_Condition:LL12_LDHH 1 0.921307 554.284000 484.413000 52.300400 12.842500 20.930900 203.117000 485.217000 260.745000 80.974000 20.080200 90.130300 214.936000 18.777304 124.741965
Gene:AT1G01060 At063 Y TCTTCTTC 14.5 TAIR9 TAIR:At1g01060 Chr1 37797 18 37790 11 - 37779 718 37061 261569_at Circadian_Condition:LL12_LDHH 1 0.921307 554.284000 484.413000 52.300400 12.842500 20.930900 203.117000 485.217000 260.745000 80.974000 20.080200 90.130300 214.936000 18.777304 124.741965
Gene:AT1G01060 At042 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At075 | At083 | At040 | At009 Y CTTCTTCC | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | CTCTTCTT | TCTCTTCT | TTCTCTTC | CTTCTCTT 24.5 | 25.5 | 26.5 | 27.5 | 28.5 | 29.5 | 30.5 | 31.5 | 32.5 | 33.5 | 34.5 | 35.5 TAIR9 TAIR:At1g01060 Chr1 37807 | 37808 | 37809 | 37810 | 37811 | 37812 | 37813 | 37814 | 37815 | 37816 | 37817 | 37818 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 37800 | 37801 | 37802 | 37803 | 37804 | 37805 | 37806 | 37807 | 37808 | 37809 | 37810 | 37811 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 - 37779 718 37061 261569_at Circadian_Condition:LL12_LDHH 1 0.921307 554.284000 484.413000 52.300400 12.842500 20.930900 203.117000 485.217000 260.745000 80.974000 20.080200 90.130300 214.936000 18.777304 124.741965
Gene:AT1G01080 At005 Y TTCTTCTC 8.5 TAIR9 TAIR:At1g01080 Chr1 46825 -5 46818 -12 - 46830 41 46789 261577_at Circadian_Condition:LL12_LDHH 17 0.614213 260.319000 163.600000 173.628000 218.322000 166.995000 181.444000 159.371000 120.747000 174.413000 283.274000 212.768000 248.117000 2.007209 14.760776
Gene:AT1G01090 At090 Y CTCTCTTT 29.5 TAIR9 TAIR:At1g01090 Chr1 49245 -26 49238 -33 - 49271 105 49166 261583_at Circadian_Condition:LL12_LDHH 23 0.579996 1893.340000 1760.070000 1826.300000 1686.580000 1585.930000 1817.800000 1814.150000 1446.410000 1614.840000 1721.610000 1721.830000 1683.060000 19.772869 25.955911
Gene:AT1G01090 At026 Y TTCTCTCC 10.5 TAIR9 TAIR:At1g01090 Chr1 49264 -7 49257 -14 - 49271 105 49166 261583_at Circadian_Condition:LL12_LDHH 23 0.579996 1893.340000 1760.070000 1826.300000 1686.580000 1585.930000 1817.800000 1814.150000 1446.410000 1614.840000 1721.610000 1721.830000 1683.060000 19.772869 25.955911
Gene:AT1G01090 At114 Y CCTCCTCT 12.5 TAIR9 TAIR:At1g01090 Chr1 49287 16 49280 9 - 49271 105 49166 261583_at Circadian_Condition:LL12_LDHH 23 0.579996 1893.340000 1760.070000 1826.300000 1686.580000 1585.930000 1817.800000 1814.150000 1446.410000 1614.840000 1721.610000 1721.830000 1683.060000 19.772869 25.955911
Gene:AT2G26500 At710 | At348 | At712 | At701 Y TCCTCCTT | CCTCCTTC | TCCTTCCT | CCTTCCTT 45.5 | 44.5 | 42.5 | 41.5 TAIR9 TAIR:At2g26500 Chr2 11270177 | 11270178 | 11270180 | 11270181 -49 | -48 | -46 | -45 11270184 | 11270185 | 11270187 | 11270188 -42 | -41 | -39 | -38 + 11270226 -144 11270370 245044_at Circadian_Condition:LL12_LDHH 15 0.846622 4061.250000 3040.940000 3514.070000 4380.890000 4222.210000 3526.330000 2733.840000 3403.820000 3746.960000 4154.690000 4048.280000 3598.730000 7.884582 257.487298
Gene:AT2G26500 At004 | At009 | At040 | At083 | At075 Y TCTTCTCT | CTTCTCTT | TTCTCTTC | TCTCTTCT | CTCTTCTT 25.5 | 24.5 | 23.5 | 22.5 | 21.5 TAIR9 TAIR:At2g26500 Chr2 11270197 | 11270198 | 11270199 | 11270200 | 11270201 -29 | -28 | -27 | -26 | -25 11270204 | 11270205 | 11270206 | 11270207 | 11270208 -22 | -21 | -20 | -19 | -18 + 11270226 -144 11270370 245044_at Circadian_Condition:LL12_LDHH 15 0.846622 4061.250000 3040.940000 3514.070000 4380.890000 4222.210000 3526.330000 2733.840000 3403.820000 3746.960000 4154.690000 4048.280000 3598.730000 7.884582 257.487298
Gene:AT2G26500 At020 | At717 | At060 Y CTTCTCCT | TTCTCCTT | CTCCTTTC 10.5 | 9.5 | 7.5 TAIR9 TAIR:At2g26500 Chr2 11270212 | 11270213 | 11270215 -14 | -13 | -11 11270219 | 11270220 | 11270222 -7 | -6 | -4 + 11270226 -144 11270370 245044_at Circadian_Condition:LL12_LDHH 15 0.846622 4061.250000 3040.940000 3514.070000 4380.890000 4222.210000 3526.330000 2733.840000 3403.820000 3746.960000 4154.690000 4048.280000 3598.730000 7.884582 257.487298
Gene:AT2G26500 At009 Y CTTCTCTT 14.5 TAIR9 TAIR:At2g26500 Chr2 11270237 11 11270244 18 + 11270226 -144 11270370 245044_at Circadian_Condition:LL12_LDHH 15 0.846622 4061.250000 3040.940000 3514.070000 4380.890000 4222.210000 3526.330000 2733.840000 3403.820000 3746.960000 4154.690000 4048.280000 3598.730000 7.884582 257.487298
Gene:AT2G26510 At004 | At009 Y TCTTCTCT | CTTCTCTT 33.5 | 34.5 TAIR9 TAIR:At2g26510 Chr2 11273999 | 11274000 30 | 31 11274006 | 11274007 37 | 38 + 11273969 -149 11274118 245046_at Circadian_Condition:LL12_LDHH 13 0.798804 252.859000 238.471000 360.608000 336.984000 323.445000 355.585000 215.691000 320.808000 376.535000 393.675000 290.596000 342.704000 6.170235 25.768671
Gene:AT2G26530 At005 | At051 | At066 Y TTCTTCTC | CTTCTTCT | CCTTCTTC 19.5 | 20.5 | 21.5 TAIR9 TAIR:At2g26530 Chr2 11284041 | 11284042 | 11284043 23 | 24 | 25 11284034 | 11284035 | 11284036 16 | 17 | 18 - 11284018 29 11283989 245041_at Circadian_Condition:LL12_LDHH 5 0.868889 13.096200 19.979100 14.159400 10.551000 9.844280 7.549570 10.597500 15.122400 16.053000 9.529800 9.047460 10.307800 23.158426 2.112553
Gene:AT2G26580 At705 | At079 | At035 Y CTCTCCTT | CCTCTCCT | TCCTCTCC 41.5 | 40.5 | 39.5 TAIR9 TAIR:At2g26580 Chr2 11306971 | 11306972 | 11306973 -38 | -37 | -36 11306964 | 11306965 | 11306966 -45 | -44 | -43 - 11307009 270 11306739 245029_at Circadian_Condition:LL12_LDHH 10 0.366428 74.431700 45.834700 83.905300 60.963000 41.177300 47.691100 51.934500 47.846200 42.405500 50.450700 90.284300 52.220300 7.993663 1.647486
Gene:AT2G26590 At026 | At006 | At008 | At007 Y TTCTCTCC | TTTCTCTC | CTTTCTCT | TCTTTCTC 19.5 | 18.5 | 17.5 | 16.5 TAIR9 TAIR:At2g26590 Chr2 11315061 | 11315062 | 11315063 | 11315064 -16 | -15 | -14 | -13 11315054 | 11315055 | 11315056 | 11315057 -23 | -22 | -21 | -20 - 11315077 360 11314717 245045_at Circadian_Condition:LL12_LDHH 4 0.565979 229.925000 235.943000 213.704000 200.884000 217.084000 217.737000 181.491000 227.623000 208.547000 217.929000 208.974000 214.032000 21.758803 2.425709
Gene:AT1G01010 At723 | At728 | At722 GA CGAGAGAG | GAGAGAGA | AGAGAGAT 32.5 | 33.5 | 34.5 TAIR9 TAIR:At1g01010 Chr1 3697 | 3698 | 3699 29 | 30 | 31 3704 | 3705 | 3706 36 | 37 | 38 + 3668 -92 3760 261585_at Circadian_Condition:LL12_LDHH 10 0.571267 7.786760 8.526680 12.474300 9.710990 9.913910 11.306100 8.295340 15.346400 10.366300 11.792900 7.774930 10.542300 10.370006 0.568935
Gene:AT1G01070 At730 | At722 | At728 | At721 | At731 GA GAGAGATA | AGAGAGAT | GAGAGAGA | AGAGAGAG | TAGAGAGA 19.5 | 20.5 | 21.5 | 22.5 | 23.5 TAIR9 TAIR:At1g01070 Chr1 40884 | 40885 | 40886 | 40887 | 40888 23 | 24 | 25 | 26 | 27 40877 | 40878 | 40879 | 40880 | 40881 16 | 17 | 18 | 19 | 20 - 40861 264 40597 261576_at Circadian_Condition:LL12_LDHH 4 0.842840 17.847200 17.154800 13.487300 16.342000 7.982460 11.123500 11.802000 20.348400 15.978100 13.556700 8.873000 9.229270 23.194360 2.196444
Gene:AT2G26570 At734 | At721 | At728 | At719 GA AAGAGAGA | AGAGAGAG | GAGAGAGA | AGAGAGAA 11.5 | 10.5 | 9.5 | 8.5 TAIR9 TAIR:At2g26570 Chr2 11299018 | 11299019 | 11299020 | 11299021 -15 | -14 | -13 | -12 11299025 | 11299026 | 11299027 | 11299028 -8 | -7 | -6 | -5 + 11299033 -532 11299565 245028_at Circadian_Condition:LL12_LDHH 1 0.495856 295.779000 308.737000 212.088000 253.368000 248.640000 213.252000 246.342000 183.531000 243.855000 176.594000 196.464000 204.210000 20.165541 11.508954
Gene:AT2G26570 At730 GA GAGAGATA 28.5 TAIR9 TAIR:At2g26570 Chr2 11299058 25 11299065 32 + 11299033 -532 11299565 245028_at Circadian_Condition:LL12_LDHH 1 0.495856 295.779000 308.737000 212.088000 253.368000 248.640000 213.252000 246.342000 183.531000 243.855000 176.594000 196.464000 204.210000 20.165541 11.508954
* Row count is limited to 100.