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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
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#LINK
#lang en
#attribution_name Koro NISHIKATA
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PPDB_LL_LDHC
#download_from http://linkdata.org/work/rdf1s289i
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s219i/Octamer_elements.html#
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp TAIR gene chromosome position start position start from TSS peak position end position end from TSS peak strand sequence TSS peak position TSS peak position from Initiation codon Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd string:en string:en string:en float string:en string:en string:en integer integer integer integer string:en string:en integer integer string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 TAIR:At1g01010 Chr1 3455 | 3456 -213 | -212 3462 | 3463 -206 | -205 + 3668 -92 3760 261585_at Circadian_Condition:LL_LDHC 23 0.717176 6.799680 11.841300 5.947740 6.112530 5.635640 8.570000 10.512800 6.603250 5.918020 6.503490 8.307980 6.759010 18.394124 0.727079
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 TAIR:At1g01010 Chr1 3535 | 3536 | 3537 -133 | -132 | -131 3542 | 3543 | 3544 -126 | -125 | -124 + 3668 -92 3760 261585_at Circadian_Condition:LL_LDHC 23 0.717176 6.799680 11.841300 5.947740 6.112530 5.635640 8.570000 10.512800 6.603250 5.918020 6.503490 8.307980 6.759010 18.394124 0.727079
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 TAIR:At1g01010 Chr1 3601 -67 3608 -60 + 3668 -92 3760 261585_at Circadian_Condition:LL_LDHC 23 0.717176 6.799680 11.841300 5.947740 6.112530 5.635640 8.570000 10.512800 6.603250 5.918020 6.503490 8.307980 6.759010 18.394124 0.727079
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 TAIR:At1g01060 Chr1 37913 134 37906 127 - 37779 718 37061 261569_at Circadian_Condition:LL_LDHC 1 0.919990 2034.060000 483.085000 4.838540 3.973530 8.879690 125.197000 982.028000 699.693000 131.125000 9.150800 8.603460 202.681000 18.859784 314.736964
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 TAIR:At1g01060 Chr1 37950 | 37951 | 37952 | 37953 171 | 172 | 173 | 174 37943 | 37944 | 37945 | 37946 164 | 165 | 166 | 167 - 37779 718 37061 261569_at Circadian_Condition:LL_LDHC 1 0.919990 2034.060000 483.085000 4.838540 3.973530 8.879690 125.197000 982.028000 699.693000 131.125000 9.150800 8.603460 202.681000 18.859784 314.736964
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 TAIR:At1g01070 Chr1 40933 72 40926 65 - 40861 264 40597 261576_at Circadian_Condition:LL_LDHC 0 0.569027 14.165900 8.934570 6.637720 6.618780 6.311630 13.766300 11.288400 14.948200 7.858570 14.542200 8.869480 9.422000 18.002457 1.082513
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 TAIR:At1g01080 Chr1 46877 | 46878 | 46879 | 46880 | 46881 47 | 48 | 49 | 50 | 51 46870 | 46871 | 46872 | 46873 | 46874 40 | 41 | 42 | 43 | 44 - 46830 41 46789 261577_at Circadian_Condition:LL_LDHC 17 0.867406 471.479000 375.287000 393.742000 520.105000 584.361000 489.953000 453.469000 473.246000 418.422000 508.309000 609.143000 495.726000 10.476802 40.604390
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 TAIR:At1g01080 Chr1 46978 | 46979 | 46980 | 46981 | 46982 148 | 149 | 150 | 151 | 152 46971 | 46972 | 46973 | 46974 | 46975 141 | 142 | 143 | 144 | 145 - 46830 41 46789 261577_at Circadian_Condition:LL_LDHC 17 0.867406 471.479000 375.287000 393.742000 520.105000 584.361000 489.953000 453.469000 473.246000 418.422000 508.309000 609.143000 495.726000 10.476802 40.604390
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 TAIR:At1g01080 Chr1 47119 | 47120 | 47121 | 47122 289 | 290 | 291 | 292 47112 | 47113 | 47114 | 47115 282 | 283 | 284 | 285 - 46830 41 46789 261577_at Circadian_Condition:LL_LDHC 17 0.867406 471.479000 375.287000 393.742000 520.105000 584.361000 489.953000 453.469000 473.246000 418.422000 508.309000 609.143000 495.726000 10.476802 40.604390
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 TAIR:At1g01090 Chr1 49365 94 49358 87 - 49271 105 49166 261583_at Circadian_Condition:LL_LDHC 5 0.778906 2390.570000 2426.260000 2123.270000 1984.000000 1598.280000 1790.730000 2097.190000 1988.660000 2153.130000 2392.940000 1757.300000 2048.350000 22.798170 113.588375
Gene:AT2G26530 OctamerElement:AtREG473 | OctamerElement:AtREG652 REG CGGTTTAA | ACGGTTTA 77.5 | 78.5 TAIR9 TAIR:At2g26530 Chr2 11284099 | 11284100 81 | 82 11284092 | 11284093 74 | 75 - 11284018 29 11283989 245041_at Circadian_Condition:LL_LDHC 7 0.847580 22.383800 50.137300 41.083600 26.949900 8.402560 6.664980 7.552770 9.993950 23.152900 33.223500 18.665400 11.343600 1.879982 6.493037
Gene:AT2G26530 OctamerElement:AtREG571 | OctamerElement:AtREG581 | OctamerElement:AtREG372 | OctamerElement:AtREG386 REG TGGGCTAA | ATGGGCTA | AATGGGCT | AAATGGGC 251.5 | 252.5 | 253.5 | 254.5 TAIR9 TAIR:At2g26530 Chr2 11284273 | 11284274 | 11284275 | 11284276 255 | 256 | 257 | 258 11284266 | 11284267 | 11284268 | 11284269 248 | 249 | 250 | 251 - 11284018 29 11283989 245041_at Circadian_Condition:LL_LDHC 7 0.847580 22.383800 50.137300 41.083600 26.949900 8.402560 6.664980 7.552770 9.993950 23.152900 33.223500 18.665400 11.343600 1.879982 6.493037
Gene:AT2G26570 OctamerElement:AtREG494 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 REG CCGGGTCG | CGGGTCGG | GGGTCGGG | GGTCGGGT 273.5 | 272.5 | 271.5 | 270.5 TAIR9 TAIR:At2g26570 Chr2 11298756 | 11298757 | 11298758 | 11298759 -277 | -276 | -275 | -274 11298763 | 11298764 | 11298765 | 11298766 -270 | -269 | -268 | -267 + 11299033 -532 11299565 245028_at Circadian_Condition:LL_LDHC 8 0.623915 195.686000 176.341000 280.691000 199.670000 164.555000 168.102000 118.969000 258.888000 172.547000 179.974000 181.327000 129.095000 1.655430 19.513425
Gene:AT2G26570 OctamerElement:AtREG513 REG ACGTGGAC 134.5 TAIR9 TAIR:At2g26570 Chr2 11298895 -138 11298902 -131 + 11299033 -532 11299565 245028_at Circadian_Condition:LL_LDHC 8 0.623915 195.686000 176.341000 280.691000 199.670000 164.555000 168.102000 118.969000 258.888000 172.547000 179.974000 181.327000 129.095000 1.655430 19.513425
Gene:AT2G26590 OctamerElement:AtREG525 | OctamerElement:AtREG407 | OctamerElement:AtREG402 REG TGGGCTTG | TTGGGCTT | ATTGGGCT 107.5 | 108.5 | 109.5 TAIR9 TAIR:At2g26590 Chr2 11315188 | 11315189 | 11315190 111 | 112 | 113 11315181 | 11315182 | 11315183 104 | 105 | 106 - 11315077 360 11314717 245045_at Circadian_Condition:LL_LDHC 16 0.297893 311.659000 250.399000 274.827000 267.329000 266.251000 260.011000 141.289000 176.187000 234.870000 166.758000 240.152000 185.994000 5.014036 4.558824
Gene:AT2G26590 OctamerElement:AtREG549 REG TAAAAGCC 135.5 TAIR9 TAIR:At2g26590 Chr2 11315216 139 11315209 132 - 11315077 360 11314717 245045_at Circadian_Condition:LL_LDHC 16 0.297893 311.659000 250.399000 274.827000 267.329000 266.251000 260.011000 141.289000 176.187000 234.870000 166.758000 240.152000 185.994000 5.014036 4.558824
Gene:AT2G26590 OctamerElement:AtREG578 | OctamerElement:AtREG483 | OctamerElement:AtREG606 REG ACGTCATC | CACGTCAT | TGTCACGT 271.5 | 272.5 | 275.5 TAIR9 TAIR:At2g26590 Chr2 11315352 | 11315353 | 11315356 275 | 276 | 279 11315345 | 11315346 | 11315349 268 | 269 | 272 - 11315077 360 11314717 245045_at Circadian_Condition:LL_LDHC 16 0.297893 311.659000 250.399000 274.827000 267.329000 266.251000 260.011000 141.289000 176.187000 234.870000 166.758000 240.152000 185.994000 5.014036 4.558824
Gene:AT1G01050 At180 | At207 | At261 | At290 TATA TATATACA | ATATATAC | CATATATA | TCATATAT 26.5 | 27.5 | 28.5 | 29.5 TAIR9 TAIR:At1g01050 Chr1 33147 | 33148 | 33149 | 33150 30 | 31 | 32 | 33 33140 | 33141 | 33142 | 33143 23 | 24 | 25 | 26 - 33117 447 32670 261579_at Circadian_Condition:LL_LDHC 21 0.726582 1032.550000 640.031000 492.383000 695.271000 818.403000 893.336000 800.310000 861.088000 625.708000 666.779000 879.020000 715.899000 15.072014 71.523446
Gene:AT1G01070 At153 TATA ATATAGAG 26.5 TAIR9 TAIR:At1g01070 Chr1 40891 30 40884 23 - 40861 264 40597 261576_at Circadian_Condition:LL_LDHC 0 0.569027 14.165900 8.934570 6.637720 6.618780 6.311630 13.766300 11.288400 14.948200 7.858570 14.542200 8.869480 9.422000 18.002457 1.082513
Gene:AT2G26560 At227 | At231 | At281 | At304 TATA TATAAATA | CTATAAAT | CCTATAAA | TCCTATAA 27.5 | 28.5 | 29.5 | 30.5 TAIR9 TAIR:At2g26560 Chr2 11295837 | 11295838 | 11295839 | 11295840 31 | 32 | 33 | 34 11295830 | 11295831 | 11295832 | 11295833 24 | 25 | 26 | 27 - 11295806 98 11295708 245038_at Circadian_Condition:LL_LDHC 7 0.507040 17.634000 32.915600 82.267600 25.977200 11.822200 9.542160 5.840110 9.094060 16.795600 18.083700 10.680200 76.869000 2.109180 2.726035
Gene:AT1G01010 At708 | At121 | At050 Y CTTCCTCC | CCTCCCTC | CTCCCTCC 45.5 | 42.5 | 41.5 TAIR9 TAIR:At1g01010 Chr1 3619 | 3622 | 3623 -49 | -46 | -45 3626 | 3629 | 3630 -42 | -39 | -38 + 3668 -92 3760 261585_at Circadian_Condition:LL_LDHC 23 0.717176 6.799680 11.841300 5.947740 6.112530 5.635640 8.570000 10.512800 6.603250 5.918020 6.503490 8.307980 6.759010 18.394124 0.727079
Gene:AT1G01050 At033 | At026 | At006 Y TCTCTCCC | TTCTCTCC | TTTCTCTC 20.5 | 19.5 | 18.5 TAIR9 TAIR:At1g01050 Chr1 33100 | 33101 | 33102 -17 | -16 | -15 33093 | 33094 | 33095 -24 | -23 | -22 - 33117 447 32670 261579_at Circadian_Condition:LL_LDHC 21 0.726582 1032.550000 640.031000 492.383000 695.271000 818.403000 893.336000 800.310000 861.088000 625.708000 666.779000 879.020000 715.899000 15.072014 71.523446
Gene:AT1G01060 At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At066 | At713 | At085 | At088 | At715 Y TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | CCTTCTTC | TCCTTCTT | TTCCTTCT | CTTCCTTC | TCTTCCTT 39.5 | 38.5 | 37.5 | 36.5 | 35.5 | 34.5 | 33.5 | 32.5 | 31.5 | 30.5 | 29.5 | 28.5 | 27.5 | 26.5 | 25.5 | 24.5 | 23.5 | 22.5 | 21.5 | 20.5 | 19.5 | 18.5 | 17.5 | 16.5 | 15.5 | 14.5 | 13.5 | 12.5 | 11.5 | 10.5 | 9.5 | 8.5 | 7.5 | 6.5 | 5.5 TAIR9 TAIR:At1g01060 Chr1 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 | 37771 | 37772 | 37773 | 37774 | 37775 | 37776 | 37777 -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 | -8 | -7 | -6 | -5 | -4 | -3 | -2 37736 | 37737 | 37738 | 37739 | 37740 | 37741 | 37742 | 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 -43 | -42 | -41 | -40 | -39 | -38 | -37 | -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 - 37779 718 37061 261569_at Circadian_Condition:LL_LDHC 1 0.919990 2034.060000 483.085000 4.838540 3.973530 8.879690 125.197000 982.028000 699.693000 131.125000 9.150800 8.603460 202.681000 18.859784 314.736964
Gene:AT1G01060 At063 Y TCTTCTTC 14.5 TAIR9 TAIR:At1g01060 Chr1 37797 18 37790 11 - 37779 718 37061 261569_at Circadian_Condition:LL_LDHC 1 0.919990 2034.060000 483.085000 4.838540 3.973530 8.879690 125.197000 982.028000 699.693000 131.125000 9.150800 8.603460 202.681000 18.859784 314.736964
Gene:AT1G01060 At042 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At075 | At083 | At040 | At009 Y CTTCTTCC | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | CTCTTCTT | TCTCTTCT | TTCTCTTC | CTTCTCTT 24.5 | 25.5 | 26.5 | 27.5 | 28.5 | 29.5 | 30.5 | 31.5 | 32.5 | 33.5 | 34.5 | 35.5 TAIR9 TAIR:At1g01060 Chr1 37807 | 37808 | 37809 | 37810 | 37811 | 37812 | 37813 | 37814 | 37815 | 37816 | 37817 | 37818 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 37800 | 37801 | 37802 | 37803 | 37804 | 37805 | 37806 | 37807 | 37808 | 37809 | 37810 | 37811 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 - 37779 718 37061 261569_at Circadian_Condition:LL_LDHC 1 0.919990 2034.060000 483.085000 4.838540 3.973530 8.879690 125.197000 982.028000 699.693000 131.125000 9.150800 8.603460 202.681000 18.859784 314.736964
Gene:AT1G01080 At005 Y TTCTTCTC 8.5 TAIR9 TAIR:At1g01080 Chr1 46825 -5 46818 -12 - 46830 41 46789 261577_at Circadian_Condition:LL_LDHC 17 0.867406 471.479000 375.287000 393.742000 520.105000 584.361000 489.953000 453.469000 473.246000 418.422000 508.309000 609.143000 495.726000 10.476802 40.604390
Gene:AT1G01090 At090 Y CTCTCTTT 29.5 TAIR9 TAIR:At1g01090 Chr1 49245 -26 49238 -33 - 49271 105 49166 261583_at Circadian_Condition:LL_LDHC 5 0.778906 2390.570000 2426.260000 2123.270000 1984.000000 1598.280000 1790.730000 2097.190000 1988.660000 2153.130000 2392.940000 1757.300000 2048.350000 22.798170 113.588375
Gene:AT1G01090 At026 Y TTCTCTCC 10.5 TAIR9 TAIR:At1g01090 Chr1 49264 -7 49257 -14 - 49271 105 49166 261583_at Circadian_Condition:LL_LDHC 5 0.778906 2390.570000 2426.260000 2123.270000 1984.000000 1598.280000 1790.730000 2097.190000 1988.660000 2153.130000 2392.940000 1757.300000 2048.350000 22.798170 113.588375
Gene:AT1G01090 At114 Y CCTCCTCT 12.5 TAIR9 TAIR:At1g01090 Chr1 49287 16 49280 9 - 49271 105 49166 261583_at Circadian_Condition:LL_LDHC 5 0.778906 2390.570000 2426.260000 2123.270000 1984.000000 1598.280000 1790.730000 2097.190000 1988.660000 2153.130000 2392.940000 1757.300000 2048.350000 22.798170 113.588375
Gene:AT2G26500 At710 | At348 | At712 | At701 Y TCCTCCTT | CCTCCTTC | TCCTTCCT | CCTTCCTT 45.5 | 44.5 | 42.5 | 41.5 TAIR9 TAIR:At2g26500 Chr2 11270177 | 11270178 | 11270180 | 11270181 -49 | -48 | -46 | -45 11270184 | 11270185 | 11270187 | 11270188 -42 | -41 | -39 | -38 + 11270226 -144 11270370 245044_at Circadian_Condition:LL_LDHC 14 0.897362 6455.990000 6449.150000 6685.860000 7431.460000 7815.120000 6363.230000 6100.370000 5507.000000 5837.890000 6737.980000 7881.900000 7586.800000 9.882572 438.586405
Gene:AT2G26500 At004 | At009 | At040 | At083 | At075 Y TCTTCTCT | CTTCTCTT | TTCTCTTC | TCTCTTCT | CTCTTCTT 25.5 | 24.5 | 23.5 | 22.5 | 21.5 TAIR9 TAIR:At2g26500 Chr2 11270197 | 11270198 | 11270199 | 11270200 | 11270201 -29 | -28 | -27 | -26 | -25 11270204 | 11270205 | 11270206 | 11270207 | 11270208 -22 | -21 | -20 | -19 | -18 + 11270226 -144 11270370 245044_at Circadian_Condition:LL_LDHC 14 0.897362 6455.990000 6449.150000 6685.860000 7431.460000 7815.120000 6363.230000 6100.370000 5507.000000 5837.890000 6737.980000 7881.900000 7586.800000 9.882572 438.586405
Gene:AT2G26500 At020 | At717 | At060 Y CTTCTCCT | TTCTCCTT | CTCCTTTC 10.5 | 9.5 | 7.5 TAIR9 TAIR:At2g26500 Chr2 11270212 | 11270213 | 11270215 -14 | -13 | -11 11270219 | 11270220 | 11270222 -7 | -6 | -4 + 11270226 -144 11270370 245044_at Circadian_Condition:LL_LDHC 14 0.897362 6455.990000 6449.150000 6685.860000 7431.460000 7815.120000 6363.230000 6100.370000 5507.000000 5837.890000 6737.980000 7881.900000 7586.800000 9.882572 438.586405
Gene:AT2G26500 At009 Y CTTCTCTT 14.5 TAIR9 TAIR:At2g26500 Chr2 11270237 11 11270244 18 + 11270226 -144 11270370 245044_at Circadian_Condition:LL_LDHC 14 0.897362 6455.990000 6449.150000 6685.860000 7431.460000 7815.120000 6363.230000 6100.370000 5507.000000 5837.890000 6737.980000 7881.900000 7586.800000 9.882572 438.586405
Gene:AT2G26510 At004 | At009 Y TCTTCTCT | CTTCTCTT 33.5 | 34.5 TAIR9 TAIR:At2g26510 Chr2 11273999 | 11274000 30 | 31 11274006 | 11274007 37 | 38 + 11273969 -149 11274118 245046_at Circadian_Condition:LL_LDHC 15 0.830159 223.536000 130.885000 336.099000 264.563000 269.513000 383.440000 292.019000 112.469000 251.780000 350.055000 289.538000 238.730000 9.443617 32.205550
Gene:AT2G26530 At005 | At051 | At066 Y TTCTTCTC | CTTCTTCT | CCTTCTTC 19.5 | 20.5 | 21.5 TAIR9 TAIR:At2g26530 Chr2 11284041 | 11284042 | 11284043 23 | 24 | 25 11284034 | 11284035 | 11284036 16 | 17 | 18 - 11284018 29 11283989 245041_at Circadian_Condition:LL_LDHC 7 0.847580 22.383800 50.137300 41.083600 26.949900 8.402560 6.664980 7.552770 9.993950 23.152900 33.223500 18.665400 11.343600 1.879982 6.493037
Gene:AT2G26580 At705 | At079 | At035 Y CTCTCCTT | CCTCTCCT | TCCTCTCC 41.5 | 40.5 | 39.5 TAIR9 TAIR:At2g26580 Chr2 11306971 | 11306972 | 11306973 -38 | -37 | -36 11306964 | 11306965 | 11306966 -45 | -44 | -43 - 11307009 270 11306739 245029_at Circadian_Condition:LL_LDHC 11 0.790187 87.774600 103.213000 261.621000 272.774000 151.547000 66.767700 131.170000 76.335600 95.264800 152.537000 211.044000 147.371000 6.359911 30.908869
Gene:AT2G26590 At026 | At006 | At008 | At007 Y TTCTCTCC | TTTCTCTC | CTTTCTCT | TCTTTCTC 19.5 | 18.5 | 17.5 | 16.5 TAIR9 TAIR:At2g26590 Chr2 11315061 | 11315062 | 11315063 | 11315064 -16 | -15 | -14 | -13 11315054 | 11315055 | 11315056 | 11315057 -23 | -22 | -21 | -20 - 11315077 360 11314717 245045_at Circadian_Condition:LL_LDHC 16 0.297893 311.659000 250.399000 274.827000 267.329000 266.251000 260.011000 141.289000 176.187000 234.870000 166.758000 240.152000 185.994000 5.014036 4.558824
Gene:AT1G01010 At723 | At728 | At722 GA CGAGAGAG | GAGAGAGA | AGAGAGAT 32.5 | 33.5 | 34.5 TAIR9 TAIR:At1g01010 Chr1 3697 | 3698 | 3699 29 | 30 | 31 3704 | 3705 | 3706 36 | 37 | 38 + 3668 -92 3760 261585_at Circadian_Condition:LL_LDHC 23 0.717176 6.799680 11.841300 5.947740 6.112530 5.635640 8.570000 10.512800 6.603250 5.918020 6.503490 8.307980 6.759010 18.394124 0.727079
Gene:AT1G01070 At730 | At722 | At728 | At721 | At731 GA GAGAGATA | AGAGAGAT | GAGAGAGA | AGAGAGAG | TAGAGAGA 19.5 | 20.5 | 21.5 | 22.5 | 23.5 TAIR9 TAIR:At1g01070 Chr1 40884 | 40885 | 40886 | 40887 | 40888 23 | 24 | 25 | 26 | 27 40877 | 40878 | 40879 | 40880 | 40881 16 | 17 | 18 | 19 | 20 - 40861 264 40597 261576_at Circadian_Condition:LL_LDHC 0 0.569027 14.165900 8.934570 6.637720 6.618780 6.311630 13.766300 11.288400 14.948200 7.858570 14.542200 8.869480 9.422000 18.002457 1.082513
Gene:AT2G26570 At734 | At721 | At728 | At719 GA AAGAGAGA | AGAGAGAG | GAGAGAGA | AGAGAGAA 11.5 | 10.5 | 9.5 | 8.5 TAIR9 TAIR:At2g26570 Chr2 11299018 | 11299019 | 11299020 | 11299021 -15 | -14 | -13 | -12 11299025 | 11299026 | 11299027 | 11299028 -8 | -7 | -6 | -5 + 11299033 -532 11299565 245028_at Circadian_Condition:LL_LDHC 8 0.623915 195.686000 176.341000 280.691000 199.670000 164.555000 168.102000 118.969000 258.888000 172.547000 179.974000 181.327000 129.095000 1.655430 19.513425
Gene:AT2G26570 At730 GA GAGAGATA 28.5 TAIR9 TAIR:At2g26570 Chr2 11299058 25 11299065 32 + 11299033 -532 11299565 245028_at Circadian_Condition:LL_LDHC 8 0.623915 195.686000 176.341000 280.691000 199.670000 164.555000 168.102000 118.969000 258.888000 172.547000 179.974000 181.327000 129.095000 1.655430 19.513425
* Row count is limited to 100.