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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
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#LINK
#lang en
#attribution_name Koro NISHIKATA
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PPDB_LL_LLHC
#download_from http://linkdata.org/work/rdf1s289i
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s219i/Octamer_elements.html#
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp TAIR gene chromosome position start position start from TSS peak position end position end from TSS peak strand sequence TSS peak position TSS peak position from Initiation codon Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd string:en string:en string:en float string:en string:en string:en integer integer integer integer string:en string:en integer integer string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 TAIR:At1g01010 Chr1 3455 | 3456 -213 | -212 3462 | 3463 -206 | -205 + 3668 -92 3760 261585_at Circadian_Condition:LL_LLHC 18 0.482422 11.896900 9.553900 8.933160 10.217200 13.811400 11.107500 7.918760 6.363980 7.084290 7.276060 7.525010 8.366780 12.660038 0.650207
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 TAIR:At1g01010 Chr1 3535 | 3536 | 3537 -133 | -132 | -131 3542 | 3543 | 3544 -126 | -125 | -124 + 3668 -92 3760 261585_at Circadian_Condition:LL_LLHC 18 0.482422 11.896900 9.553900 8.933160 10.217200 13.811400 11.107500 7.918760 6.363980 7.084290 7.276060 7.525010 8.366780 12.660038 0.650207
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 TAIR:At1g01010 Chr1 3601 -67 3608 -60 + 3668 -92 3760 261585_at Circadian_Condition:LL_LLHC 18 0.482422 11.896900 9.553900 8.933160 10.217200 13.811400 11.107500 7.918760 6.363980 7.084290 7.276060 7.525010 8.366780 12.660038 0.650207
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 TAIR:At1g01060 Chr1 37913 134 37906 127 - 37779 718 37061 261569_at Circadian_Condition:LL_LLHC 2 0.951721 1358.800000 967.657000 41.369000 5.162730 5.907350 108.381000 1045.930000 1015.070000 104.384000 7.267420 11.185000 481.797000 19.340909 319.247595
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 TAIR:At1g01060 Chr1 37950 | 37951 | 37952 | 37953 171 | 172 | 173 | 174 37943 | 37944 | 37945 | 37946 164 | 165 | 166 | 167 - 37779 718 37061 261569_at Circadian_Condition:LL_LLHC 2 0.951721 1358.800000 967.657000 41.369000 5.162730 5.907350 108.381000 1045.930000 1015.070000 104.384000 7.267420 11.185000 481.797000 19.340909 319.247595
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 TAIR:At1g01070 Chr1 40933 72 40926 65 - 40861 264 40597 261576_at Circadian_Condition:LL_LLHC 8 0.626994 13.701500 14.237100 18.410800 15.275000 15.022700 8.237440 14.655600 14.567500 11.366300 8.758260 10.828100 11.930300 12.348721 0.910460
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 TAIR:At1g01080 Chr1 46877 | 46878 | 46879 | 46880 | 46881 47 | 48 | 49 | 50 | 51 46870 | 46871 | 46872 | 46873 | 46874 40 | 41 | 42 | 43 | 44 - 46830 41 46789 261577_at Circadian_Condition:LL_LLHC 16 0.607727 572.950000 394.806000 579.101000 472.801000 494.375000 543.235000 448.864000 354.644000 403.199000 420.866000 485.294000 439.142000 12.250074 16.655864
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 TAIR:At1g01080 Chr1 46978 | 46979 | 46980 | 46981 | 46982 148 | 149 | 150 | 151 | 152 46971 | 46972 | 46973 | 46974 | 46975 141 | 142 | 143 | 144 | 145 - 46830 41 46789 261577_at Circadian_Condition:LL_LLHC 16 0.607727 572.950000 394.806000 579.101000 472.801000 494.375000 543.235000 448.864000 354.644000 403.199000 420.866000 485.294000 439.142000 12.250074 16.655864
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 TAIR:At1g01080 Chr1 47119 | 47120 | 47121 | 47122 289 | 290 | 291 | 292 47112 | 47113 | 47114 | 47115 282 | 283 | 284 | 285 - 46830 41 46789 261577_at Circadian_Condition:LL_LLHC 16 0.607727 572.950000 394.806000 579.101000 472.801000 494.375000 543.235000 448.864000 354.644000 403.199000 420.866000 485.294000 439.142000 12.250074 16.655864
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 TAIR:At1g01090 Chr1 49365 94 49358 87 - 49271 105 49166 261583_at Circadian_Condition:LL_LLHC 8 0.603580 2518.360000 2106.380000 3281.660000 2668.380000 2431.210000 2310.600000 2318.040000 2544.510000 2440.740000 2293.270000 2579.000000 2314.100000 3.544482 88.890144
Gene:AT2G26530 OctamerElement:AtREG473 | OctamerElement:AtREG652 REG CGGTTTAA | ACGGTTTA 77.5 | 78.5 TAIR9 TAIR:At2g26530 Chr2 11284099 | 11284100 81 | 82 11284092 | 11284093 74 | 75 - 11284018 29 11283989 245041_at Circadian_Condition:LL_LLHC 8 0.840460 9.841690 35.302800 137.702000 62.522300 29.854200 19.934800 24.745300 40.100200 61.578900 68.319600 18.881700 15.070700 2.996509 19.470200
Gene:AT2G26530 OctamerElement:AtREG571 | OctamerElement:AtREG581 | OctamerElement:AtREG372 | OctamerElement:AtREG386 REG TGGGCTAA | ATGGGCTA | AATGGGCT | AAATGGGC 251.5 | 252.5 | 253.5 | 254.5 TAIR9 TAIR:At2g26530 Chr2 11284273 | 11284274 | 11284275 | 11284276 255 | 256 | 257 | 258 11284266 | 11284267 | 11284268 | 11284269 248 | 249 | 250 | 251 - 11284018 29 11283989 245041_at Circadian_Condition:LL_LLHC 8 0.840460 9.841690 35.302800 137.702000 62.522300 29.854200 19.934800 24.745300 40.100200 61.578900 68.319600 18.881700 15.070700 2.996509 19.470200
Gene:AT2G26570 OctamerElement:AtREG494 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 REG CCGGGTCG | CGGGTCGG | GGGTCGGG | GGTCGGGT 273.5 | 272.5 | 271.5 | 270.5 TAIR9 TAIR:At2g26570 Chr2 11298756 | 11298757 | 11298758 | 11298759 -277 | -276 | -275 | -274 11298763 | 11298764 | 11298765 | 11298766 -270 | -269 | -268 | -267 + 11299033 -532 11299565 245028_at Circadian_Condition:LL_LLHC 9 0.559943 234.026000 199.978000 397.111000 270.547000 234.885000 213.132000 214.849000 218.386000 202.841000 181.083000 116.084000 193.459000 10.917959 19.599595
Gene:AT2G26570 OctamerElement:AtREG513 REG ACGTGGAC 134.5 TAIR9 TAIR:At2g26570 Chr2 11298895 -138 11298902 -131 + 11299033 -532 11299565 245028_at Circadian_Condition:LL_LLHC 9 0.559943 234.026000 199.978000 397.111000 270.547000 234.885000 213.132000 214.849000 218.386000 202.841000 181.083000 116.084000 193.459000 10.917959 19.599595
Gene:AT2G26590 OctamerElement:AtREG525 | OctamerElement:AtREG407 | OctamerElement:AtREG402 REG TGGGCTTG | TTGGGCTT | ATTGGGCT 107.5 | 108.5 | 109.5 TAIR9 TAIR:At2g26590 Chr2 11315188 | 11315189 | 11315190 111 | 112 | 113 11315181 | 11315182 | 11315183 104 | 105 | 106 - 11315077 360 11314717 245045_at Circadian_Condition:LL_LLHC 18 0.557229 335.281000 329.953000 240.950000 267.353000 334.131000 261.531000 249.044000 197.794000 276.096000 310.459000 250.046000 295.879000 11.930745 6.986654
Gene:AT2G26590 OctamerElement:AtREG549 REG TAAAAGCC 135.5 TAIR9 TAIR:At2g26590 Chr2 11315216 139 11315209 132 - 11315077 360 11314717 245045_at Circadian_Condition:LL_LLHC 18 0.557229 335.281000 329.953000 240.950000 267.353000 334.131000 261.531000 249.044000 197.794000 276.096000 310.459000 250.046000 295.879000 11.930745 6.986654
Gene:AT2G26590 OctamerElement:AtREG578 | OctamerElement:AtREG483 | OctamerElement:AtREG606 REG ACGTCATC | CACGTCAT | TGTCACGT 271.5 | 272.5 | 275.5 TAIR9 TAIR:At2g26590 Chr2 11315352 | 11315353 | 11315356 275 | 276 | 279 11315345 | 11315346 | 11315349 268 | 269 | 272 - 11315077 360 11314717 245045_at Circadian_Condition:LL_LLHC 18 0.557229 335.281000 329.953000 240.950000 267.353000 334.131000 261.531000 249.044000 197.794000 276.096000 310.459000 250.046000 295.879000 11.930745 6.986654
Gene:AT1G01050 At180 | At207 | At261 | At290 TATA TATATACA | ATATATAC | CATATATA | TCATATAT 26.5 | 27.5 | 28.5 | 29.5 TAIR9 TAIR:At1g01050 Chr1 33147 | 33148 | 33149 | 33150 30 | 31 | 32 | 33 33140 | 33141 | 33142 | 33143 23 | 24 | 25 | 26 - 33117 447 32670 261579_at Circadian_Condition:LL_LLHC 21 0.792242 967.443000 690.732000 376.224000 612.186000 914.743000 714.140000 770.781000 678.014000 547.865000 662.967000 744.838000 725.833000 14.632297 75.434245
Gene:AT1G01070 At153 TATA ATATAGAG 26.5 TAIR9 TAIR:At1g01070 Chr1 40891 30 40884 23 - 40861 264 40597 261576_at Circadian_Condition:LL_LLHC 8 0.626994 13.701500 14.237100 18.410800 15.275000 15.022700 8.237440 14.655600 14.567500 11.366300 8.758260 10.828100 11.930300 12.348721 0.910460
Gene:AT2G26560 At227 | At231 | At281 | At304 TATA TATAAATA | CTATAAAT | CCTATAAA | TCCTATAA 27.5 | 28.5 | 29.5 | 30.5 TAIR9 TAIR:At2g26560 Chr2 11295837 | 11295838 | 11295839 | 11295840 31 | 32 | 33 | 34 11295830 | 11295831 | 11295832 | 11295833 24 | 25 | 26 | 27 - 11295806 98 11295708 245038_at Circadian_Condition:LL_LLHC 10 0.674604 8.276050 12.388800 11.366300 21.665400 13.055700 11.737800 10.593200 11.648100 73.771300 43.719600 10.193700 7.855670 8.403958 8.132662
Gene:AT1G01010 At708 | At121 | At050 Y CTTCCTCC | CCTCCCTC | CTCCCTCC 45.5 | 42.5 | 41.5 TAIR9 TAIR:At1g01010 Chr1 3619 | 3622 | 3623 -49 | -46 | -45 3626 | 3629 | 3630 -42 | -39 | -38 + 3668 -92 3760 261585_at Circadian_Condition:LL_LLHC 18 0.482422 11.896900 9.553900 8.933160 10.217200 13.811400 11.107500 7.918760 6.363980 7.084290 7.276060 7.525010 8.366780 12.660038 0.650207
Gene:AT1G01050 At033 | At026 | At006 Y TCTCTCCC | TTCTCTCC | TTTCTCTC 20.5 | 19.5 | 18.5 TAIR9 TAIR:At1g01050 Chr1 33100 | 33101 | 33102 -17 | -16 | -15 33093 | 33094 | 33095 -24 | -23 | -22 - 33117 447 32670 261579_at Circadian_Condition:LL_LLHC 21 0.792242 967.443000 690.732000 376.224000 612.186000 914.743000 714.140000 770.781000 678.014000 547.865000 662.967000 744.838000 725.833000 14.632297 75.434245
Gene:AT1G01060 At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At066 | At713 | At085 | At088 | At715 Y TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | CCTTCTTC | TCCTTCTT | TTCCTTCT | CTTCCTTC | TCTTCCTT 39.5 | 38.5 | 37.5 | 36.5 | 35.5 | 34.5 | 33.5 | 32.5 | 31.5 | 30.5 | 29.5 | 28.5 | 27.5 | 26.5 | 25.5 | 24.5 | 23.5 | 22.5 | 21.5 | 20.5 | 19.5 | 18.5 | 17.5 | 16.5 | 15.5 | 14.5 | 13.5 | 12.5 | 11.5 | 10.5 | 9.5 | 8.5 | 7.5 | 6.5 | 5.5 TAIR9 TAIR:At1g01060 Chr1 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 | 37771 | 37772 | 37773 | 37774 | 37775 | 37776 | 37777 -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 | -8 | -7 | -6 | -5 | -4 | -3 | -2 37736 | 37737 | 37738 | 37739 | 37740 | 37741 | 37742 | 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 -43 | -42 | -41 | -40 | -39 | -38 | -37 | -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 - 37779 718 37061 261569_at Circadian_Condition:LL_LLHC 2 0.951721 1358.800000 967.657000 41.369000 5.162730 5.907350 108.381000 1045.930000 1015.070000 104.384000 7.267420 11.185000 481.797000 19.340909 319.247595
Gene:AT1G01060 At063 Y TCTTCTTC 14.5 TAIR9 TAIR:At1g01060 Chr1 37797 18 37790 11 - 37779 718 37061 261569_at Circadian_Condition:LL_LLHC 2 0.951721 1358.800000 967.657000 41.369000 5.162730 5.907350 108.381000 1045.930000 1015.070000 104.384000 7.267420 11.185000 481.797000 19.340909 319.247595
Gene:AT1G01060 At042 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At075 | At083 | At040 | At009 Y CTTCTTCC | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | CTCTTCTT | TCTCTTCT | TTCTCTTC | CTTCTCTT 24.5 | 25.5 | 26.5 | 27.5 | 28.5 | 29.5 | 30.5 | 31.5 | 32.5 | 33.5 | 34.5 | 35.5 TAIR9 TAIR:At1g01060 Chr1 37807 | 37808 | 37809 | 37810 | 37811 | 37812 | 37813 | 37814 | 37815 | 37816 | 37817 | 37818 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 37800 | 37801 | 37802 | 37803 | 37804 | 37805 | 37806 | 37807 | 37808 | 37809 | 37810 | 37811 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 - 37779 718 37061 261569_at Circadian_Condition:LL_LLHC 2 0.951721 1358.800000 967.657000 41.369000 5.162730 5.907350 108.381000 1045.930000 1015.070000 104.384000 7.267420 11.185000 481.797000 19.340909 319.247595
Gene:AT1G01080 At005 Y TTCTTCTC 8.5 TAIR9 TAIR:At1g01080 Chr1 46825 -5 46818 -12 - 46830 41 46789 261577_at Circadian_Condition:LL_LLHC 16 0.607727 572.950000 394.806000 579.101000 472.801000 494.375000 543.235000 448.864000 354.644000 403.199000 420.866000 485.294000 439.142000 12.250074 16.655864
Gene:AT1G01090 At090 Y CTCTCTTT 29.5 TAIR9 TAIR:At1g01090 Chr1 49245 -26 49238 -33 - 49271 105 49166 261583_at Circadian_Condition:LL_LLHC 8 0.603580 2518.360000 2106.380000 3281.660000 2668.380000 2431.210000 2310.600000 2318.040000 2544.510000 2440.740000 2293.270000 2579.000000 2314.100000 3.544482 88.890144
Gene:AT1G01090 At026 Y TTCTCTCC 10.5 TAIR9 TAIR:At1g01090 Chr1 49264 -7 49257 -14 - 49271 105 49166 261583_at Circadian_Condition:LL_LLHC 8 0.603580 2518.360000 2106.380000 3281.660000 2668.380000 2431.210000 2310.600000 2318.040000 2544.510000 2440.740000 2293.270000 2579.000000 2314.100000 3.544482 88.890144
Gene:AT1G01090 At114 Y CCTCCTCT 12.5 TAIR9 TAIR:At1g01090 Chr1 49287 16 49280 9 - 49271 105 49166 261583_at Circadian_Condition:LL_LLHC 8 0.603580 2518.360000 2106.380000 3281.660000 2668.380000 2431.210000 2310.600000 2318.040000 2544.510000 2440.740000 2293.270000 2579.000000 2314.100000 3.544482 88.890144
Gene:AT2G26500 At710 | At348 | At712 | At701 Y TCCTCCTT | CCTCCTTC | TCCTTCCT | CCTTCCTT 45.5 | 44.5 | 42.5 | 41.5 TAIR9 TAIR:At2g26500 Chr2 11270177 | 11270178 | 11270180 | 11270181 -49 | -48 | -46 | -45 11270184 | 11270185 | 11270187 | 11270188 -42 | -41 | -39 | -38 + 11270226 -144 11270370 245044_at Circadian_Condition:LL_LLHC 19 0.607574 6402.550000 6486.280000 5337.110000 6033.000000 6848.410000 6818.170000 7150.560000 6338.590000 6754.170000 7149.220000 6872.500000 6997.400000 13.272144 200.101459
Gene:AT2G26500 At004 | At009 | At040 | At083 | At075 Y TCTTCTCT | CTTCTCTT | TTCTCTTC | TCTCTTCT | CTCTTCTT 25.5 | 24.5 | 23.5 | 22.5 | 21.5 TAIR9 TAIR:At2g26500 Chr2 11270197 | 11270198 | 11270199 | 11270200 | 11270201 -29 | -28 | -27 | -26 | -25 11270204 | 11270205 | 11270206 | 11270207 | 11270208 -22 | -21 | -20 | -19 | -18 + 11270226 -144 11270370 245044_at Circadian_Condition:LL_LLHC 19 0.607574 6402.550000 6486.280000 5337.110000 6033.000000 6848.410000 6818.170000 7150.560000 6338.590000 6754.170000 7149.220000 6872.500000 6997.400000 13.272144 200.101459
Gene:AT2G26500 At020 | At717 | At060 Y CTTCTCCT | TTCTCCTT | CTCCTTTC 10.5 | 9.5 | 7.5 TAIR9 TAIR:At2g26500 Chr2 11270212 | 11270213 | 11270215 -14 | -13 | -11 11270219 | 11270220 | 11270222 -7 | -6 | -4 + 11270226 -144 11270370 245044_at Circadian_Condition:LL_LLHC 19 0.607574 6402.550000 6486.280000 5337.110000 6033.000000 6848.410000 6818.170000 7150.560000 6338.590000 6754.170000 7149.220000 6872.500000 6997.400000 13.272144 200.101459
Gene:AT2G26500 At009 Y CTTCTCTT 14.5 TAIR9 TAIR:At2g26500 Chr2 11270237 11 11270244 18 + 11270226 -144 11270370 245044_at Circadian_Condition:LL_LLHC 19 0.607574 6402.550000 6486.280000 5337.110000 6033.000000 6848.410000 6818.170000 7150.560000 6338.590000 6754.170000 7149.220000 6872.500000 6997.400000 13.272144 200.101459
Gene:AT2G26510 At004 | At009 Y TCTTCTCT | CTTCTCTT 33.5 | 34.5 TAIR9 TAIR:At2g26510 Chr2 11273999 | 11274000 30 | 31 11274006 | 11274007 37 | 38 + 11273969 -149 11274118 245046_at Circadian_Condition:LL_LLHC 15 0.906729 305.170000 204.155000 338.655000 364.797000 427.481000 332.243000 287.267000 240.868000 353.184000 425.463000 333.008000 293.803000 7.940100 37.047998
Gene:AT2G26530 At005 | At051 | At066 Y TTCTTCTC | CTTCTTCT | CCTTCTTC 19.5 | 20.5 | 21.5 TAIR9 TAIR:At2g26530 Chr2 11284041 | 11284042 | 11284043 23 | 24 | 25 11284034 | 11284035 | 11284036 16 | 17 | 18 - 11284018 29 11283989 245041_at Circadian_Condition:LL_LLHC 8 0.840460 9.841690 35.302800 137.702000 62.522300 29.854200 19.934800 24.745300 40.100200 61.578900 68.319600 18.881700 15.070700 2.996509 19.470200
Gene:AT2G26580 At705 | At079 | At035 Y CTCTCCTT | CCTCTCCT | TCCTCTCC 41.5 | 40.5 | 39.5 TAIR9 TAIR:At2g26580 Chr2 11306971 | 11306972 | 11306973 -38 | -37 | -36 11306964 | 11306965 | 11306966 -45 | -44 | -43 - 11307009 270 11306739 245029_at Circadian_Condition:LL_LLHC 18 0.423175 159.009000 98.733200 51.461500 129.197000 137.138000 161.964000 141.740000 198.338000 190.347000 218.301000 204.426000 223.395000 12.065196 13.572833
Gene:AT2G26590 At026 | At006 | At008 | At007 Y TTCTCTCC | TTTCTCTC | CTTTCTCT | TCTTTCTC 19.5 | 18.5 | 17.5 | 16.5 TAIR9 TAIR:At2g26590 Chr2 11315061 | 11315062 | 11315063 | 11315064 -16 | -15 | -14 | -13 11315054 | 11315055 | 11315056 | 11315057 -23 | -22 | -21 | -20 - 11315077 360 11314717 245045_at Circadian_Condition:LL_LLHC 18 0.557229 335.281000 329.953000 240.950000 267.353000 334.131000 261.531000 249.044000 197.794000 276.096000 310.459000 250.046000 295.879000 11.930745 6.986654
Gene:AT1G01010 At723 | At728 | At722 GA CGAGAGAG | GAGAGAGA | AGAGAGAT 32.5 | 33.5 | 34.5 TAIR9 TAIR:At1g01010 Chr1 3697 | 3698 | 3699 29 | 30 | 31 3704 | 3705 | 3706 36 | 37 | 38 + 3668 -92 3760 261585_at Circadian_Condition:LL_LLHC 18 0.482422 11.896900 9.553900 8.933160 10.217200 13.811400 11.107500 7.918760 6.363980 7.084290 7.276060 7.525010 8.366780 12.660038 0.650207
Gene:AT1G01070 At730 | At722 | At728 | At721 | At731 GA GAGAGATA | AGAGAGAT | GAGAGAGA | AGAGAGAG | TAGAGAGA 19.5 | 20.5 | 21.5 | 22.5 | 23.5 TAIR9 TAIR:At1g01070 Chr1 40884 | 40885 | 40886 | 40887 | 40888 23 | 24 | 25 | 26 | 27 40877 | 40878 | 40879 | 40880 | 40881 16 | 17 | 18 | 19 | 20 - 40861 264 40597 261576_at Circadian_Condition:LL_LLHC 8 0.626994 13.701500 14.237100 18.410800 15.275000 15.022700 8.237440 14.655600 14.567500 11.366300 8.758260 10.828100 11.930300 12.348721 0.910460
Gene:AT2G26570 At734 | At721 | At728 | At719 GA AAGAGAGA | AGAGAGAG | GAGAGAGA | AGAGAGAA 11.5 | 10.5 | 9.5 | 8.5 TAIR9 TAIR:At2g26570 Chr2 11299018 | 11299019 | 11299020 | 11299021 -15 | -14 | -13 | -12 11299025 | 11299026 | 11299027 | 11299028 -8 | -7 | -6 | -5 + 11299033 -532 11299565 245028_at Circadian_Condition:LL_LLHC 9 0.559943 234.026000 199.978000 397.111000 270.547000 234.885000 213.132000 214.849000 218.386000 202.841000 181.083000 116.084000 193.459000 10.917959 19.599595
Gene:AT2G26570 At730 GA GAGAGATA 28.5 TAIR9 TAIR:At2g26570 Chr2 11299058 25 11299065 32 + 11299033 -532 11299565 245028_at Circadian_Condition:LL_LLHC 9 0.559943 234.026000 199.978000 397.111000 270.547000 234.885000 213.132000 214.849000 218.386000 202.841000 181.083000 116.084000 193.459000 10.917959 19.599595
* Row count is limited to 100.