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GenoCon2 Challenge A - Circadian Genomic (DIURNAL + PPDB promoter motif)

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Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the LDSS motifs as calculated by PPDB..

References (for PPDB):
http://www.ncbi.nlm.nih.gov/pubmed/17947329
http://www.ncbi.nlm.nih.gov/pubmed/17346352
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293
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#LINK
#lang en
#attribution_name Koro NISHIKATA
#attribution_url http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/
#license http://creativecommons.org/publicdomain/zero/1.0/deed.ja
#file_name DiurnalHours_PPDB_lux_2_LDHH
#download_from http://linkdata.org/work/rdf1s289i
#namespace Circadian_Condition http://linkdata.org/work/rdf1s290i/Circadian_condition.html#
#namespace Diurnal_Condition http://linkdata.org/work/rdf1s290i/Diurnal_condition.html#
#namespace Gene http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=
#namespace OctamerElement http://linkdata.org/work/rdf1s219i/Octamer_elements.html#
#namespace TAIR http://arabidopsis.org/servlets/TairObject?type=locus&name=
#namespace genome_version http://www.arabidopsis.org/portals/genAnnotation/gene_structural_annotation/
#property PPDB motif motif type motif sequence motif position genome_version:annotation_data.jsp TAIR gene chromosome position start position start from TSS peak position end position end from TSS peak strand sequence TSS peak position TSS peak position from Initiation codon Probe Condition Phase Correlation Expression 0 hours Expression 4 hours Expression 8 hours Expression 12 hours Expression 16 hours Expression 20 hours Expression 24 hours Expression 28 hours Expression 32 hours Expression 36 hours Expression 40 hours Expression 44 hours Sine Phase Sine Amplitude
#object_type_xsd string:en string:en string:en float string:en string:en string:en integer integer integer integer string:en string:en integer integer string string int float float float float float float float float float float float float float float float
#property_context Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion Assertion
Gene:AT1G01010 OctamerElement:AtREG514 | OctamerElement:AtREG519 REG TCGGTTTA | CGGTTTAC 209.5 | 208.5 TAIR9 TAIR:At1g01010 Chr1 3455 | 3456 -213 | -212 3462 | 3463 -206 | -205 + 3668 -92 3760 261585_at Diurnal_Condition:lux-2_LDHH 18 0.793811 6.120620 6.247050 6.911240 6.429470 7.552140 7.141410 6.223480 6.469130 6.980680 6.660970 6.956470 7.759330 1.675586 0.223306
Gene:AT1G01010 OctamerElement:AtREG473 | OctamerElement:AtREG412 | OctamerElement:AtREG521 REG TTAAACCG | TAAACCGG | AAACCGGA 129.5 | 128.5 | 127.5 TAIR9 TAIR:At1g01010 Chr1 3535 | 3536 | 3537 -133 | -132 | -131 3542 | 3543 | 3544 -126 | -125 | -124 + 3668 -92 3760 261585_at Diurnal_Condition:lux-2_LDHH 18 0.793811 6.120620 6.247050 6.911240 6.429470 7.552140 7.141410 6.223480 6.469130 6.980680 6.660970 6.956470 7.759330 1.675586 0.223306
Gene:AT1G01010 OctamerElement:AtREG626 REG AAACGCTG 63.5 TAIR9 TAIR:At1g01010 Chr1 3601 -67 3608 -60 + 3668 -92 3760 261585_at Diurnal_Condition:lux-2_LDHH 18 0.793811 6.120620 6.247050 6.911240 6.429470 7.552140 7.141410 6.223480 6.469130 6.980680 6.660970 6.956470 7.759330 1.675586 0.223306
Gene:AT1G01060 OctamerElement:AtREG623 REG ATACCCTT 130.5 TAIR9 TAIR:At1g01060 Chr1 37913 134 37906 127 - 37779 718 37061 261569_at Diurnal_Condition:lux-2_LDHH 1 0.982244 662.997000 148.797000 7.940770 4.271240 4.688610 79.996100 604.855000 147.673000 7.416600 4.672660 4.520060 87.051200 18.302714 123.586541
Gene:AT1G01060 OctamerElement:AtREG478 | OctamerElement:AtREG366 | OctamerElement:AtREG382 | OctamerElement:AtREG544 REG ACGTGTCG | CACGTGTC | CCACGTGT | ACCACGTG 167.5 | 168.5 | 169.5 | 170.5 TAIR9 TAIR:At1g01060 Chr1 37950 | 37951 | 37952 | 37953 171 | 172 | 173 | 174 37943 | 37944 | 37945 | 37946 164 | 165 | 166 | 167 - 37779 718 37061 261569_at Diurnal_Condition:lux-2_LDHH 1 0.982244 662.997000 148.797000 7.940770 4.271240 4.688610 79.996100 604.855000 147.673000 7.416600 4.672660 4.520060 87.051200 18.302714 123.586541
Gene:AT1G01070 OctamerElement:AtREG462 REG GGGCTTAT 68.5 TAIR9 TAIR:At1g01070 Chr1 40933 72 40926 65 - 40861 264 40597 261576_at Diurnal_Condition:lux-2_LDHH 13 0.922431 8.343410 24.402500 24.656600 27.948400 32.331700 32.063800 9.054290 22.315300 22.548100 29.050200 34.518100 30.480200 8.412250 4.336080
Gene:AT1G01080 OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 | OctamerElement:AtREG390 | OctamerElement:AtREG617 REG CCGACCCG | CCCGACCC | ACCCGACC | GACCCGAC | TGACCCGA 43.5 | 44.5 | 45.5 | 46.5 | 47.5 TAIR9 TAIR:At1g01080 Chr1 46877 | 46878 | 46879 | 46880 | 46881 47 | 48 | 49 | 50 | 51 46870 | 46871 | 46872 | 46873 | 46874 40 | 41 | 42 | 43 | 44 - 46830 41 46789 261577_at Diurnal_Condition:lux-2_LDHH 13 0.973977 138.258000 159.787000 217.718000 326.742000 276.616000 219.052000 130.270000 172.042000 218.214000 325.225000 293.166000 233.632000 7.604002 45.087184
Gene:AT1G01080 OctamerElement:AtREG459 | OctamerElement:AtREG359 | OctamerElement:AtREG353 | OctamerElement:AtREG356 | OctamerElement:AtREG373 REG GGCCTTTT | GGGCCTTT | TGGGCCTT | TTGGGCCT | TTTGGGCC 144.5 | 145.5 | 146.5 | 147.5 | 148.5 TAIR9 TAIR:At1g01080 Chr1 46978 | 46979 | 46980 | 46981 | 46982 148 | 149 | 150 | 151 | 152 46971 | 46972 | 46973 | 46974 | 46975 141 | 142 | 143 | 144 | 145 - 46830 41 46789 261577_at Diurnal_Condition:lux-2_LDHH 13 0.973977 138.258000 159.787000 217.718000 326.742000 276.616000 219.052000 130.270000 172.042000 218.214000 325.225000 293.166000 233.632000 7.604002 45.087184
Gene:AT1G01080 OctamerElement:AtREG437 | OctamerElement:AtREG490 | OctamerElement:AtREG361 | OctamerElement:AtREG643 REG TGGGCCAT | ATGGGCCA | AATGGGCC | GAATGGGC 285.5 | 286.5 | 287.5 | 288.5 TAIR9 TAIR:At1g01080 Chr1 47119 | 47120 | 47121 | 47122 289 | 290 | 291 | 292 47112 | 47113 | 47114 | 47115 282 | 283 | 284 | 285 - 46830 41 46789 261577_at Diurnal_Condition:lux-2_LDHH 13 0.973977 138.258000 159.787000 217.718000 326.742000 276.616000 219.052000 130.270000 172.042000 218.214000 325.225000 293.166000 233.632000 7.604002 45.087184
Gene:AT1G01090 OctamerElement:AtREG523 REG GTGGGTCC 90.5 TAIR9 TAIR:At1g01090 Chr1 49365 94 49358 87 - 49271 105 49166 261583_at Diurnal_Condition:lux-2_LDHH 21 0.973652 2328.740000 1978.910000 1484.640000 1800.780000 2141.690000 2557.830000 2427.320000 1828.930000 1343.730000 1878.860000 2240.930000 2521.020000 14.535912 258.883825
Gene:AT2G26530 OctamerElement:AtREG473 | OctamerElement:AtREG652 REG CGGTTTAA | ACGGTTTA 77.5 | 78.5 TAIR9 TAIR:At2g26530 Chr2 11284099 | 11284100 81 | 82 11284092 | 11284093 74 | 75 - 11284018 29 11283989 245041_at Diurnal_Condition:lux-2_LDHH 8 0.832980 4.946760 7.760530 14.988000 7.718940 9.051540 10.608900 4.464230 7.524450 15.709300 8.183020 9.650250 10.487100 4.507244 1.171676
Gene:AT2G26530 OctamerElement:AtREG571 | OctamerElement:AtREG581 | OctamerElement:AtREG372 | OctamerElement:AtREG386 REG TGGGCTAA | ATGGGCTA | AATGGGCT | AAATGGGC 251.5 | 252.5 | 253.5 | 254.5 TAIR9 TAIR:At2g26530 Chr2 11284273 | 11284274 | 11284275 | 11284276 255 | 256 | 257 | 258 11284266 | 11284267 | 11284268 | 11284269 248 | 249 | 250 | 251 - 11284018 29 11283989 245041_at Diurnal_Condition:lux-2_LDHH 8 0.832980 4.946760 7.760530 14.988000 7.718940 9.051540 10.608900 4.464230 7.524450 15.709300 8.183020 9.650250 10.487100 4.507244 1.171676
Gene:AT2G26570 OctamerElement:AtREG494 | OctamerElement:AtREG375 | OctamerElement:AtREG442 | OctamerElement:AtREG405 REG CCGGGTCG | CGGGTCGG | GGGTCGGG | GGTCGGGT 273.5 | 272.5 | 271.5 | 270.5 TAIR9 TAIR:At2g26570 Chr2 11298756 | 11298757 | 11298758 | 11298759 -277 | -276 | -275 | -274 11298763 | 11298764 | 11298765 | 11298766 -270 | -269 | -268 | -267 + 11299033 -532 11299565 245028_at Diurnal_Condition:lux-2_LDHH 7 0.942116 108.341000 140.470000 137.941000 117.213000 107.743000 76.155500 107.141000 144.542000 148.389000 127.370000 113.531000 79.171200 1.360257 14.995055
Gene:AT2G26570 OctamerElement:AtREG513 REG ACGTGGAC 134.5 TAIR9 TAIR:At2g26570 Chr2 11298895 -138 11298902 -131 + 11299033 -532 11299565 245028_at Diurnal_Condition:lux-2_LDHH 7 0.942116 108.341000 140.470000 137.941000 117.213000 107.743000 76.155500 107.141000 144.542000 148.389000 127.370000 113.531000 79.171200 1.360257 14.995055
Gene:AT2G26590 OctamerElement:AtREG525 | OctamerElement:AtREG407 | OctamerElement:AtREG402 REG TGGGCTTG | TTGGGCTT | ATTGGGCT 107.5 | 108.5 | 109.5 TAIR9 TAIR:At2g26590 Chr2 11315188 | 11315189 | 11315190 111 | 112 | 113 11315181 | 11315182 | 11315183 104 | 105 | 106 - 11315077 360 11314717 245045_at Diurnal_Condition:lux-2_LDHH 12 0.667208 110.942000 150.515000 135.004000 112.122000 155.334000 135.689000 100.216000 163.384000 142.628000 118.370000 160.564000 139.460000 5.925800 1.798256
Gene:AT2G26590 OctamerElement:AtREG549 REG TAAAAGCC 135.5 TAIR9 TAIR:At2g26590 Chr2 11315216 139 11315209 132 - 11315077 360 11314717 245045_at Diurnal_Condition:lux-2_LDHH 12 0.667208 110.942000 150.515000 135.004000 112.122000 155.334000 135.689000 100.216000 163.384000 142.628000 118.370000 160.564000 139.460000 5.925800 1.798256
Gene:AT2G26590 OctamerElement:AtREG578 | OctamerElement:AtREG483 | OctamerElement:AtREG606 REG ACGTCATC | CACGTCAT | TGTCACGT 271.5 | 272.5 | 275.5 TAIR9 TAIR:At2g26590 Chr2 11315352 | 11315353 | 11315356 275 | 276 | 279 11315345 | 11315346 | 11315349 268 | 269 | 272 - 11315077 360 11314717 245045_at Diurnal_Condition:lux-2_LDHH 12 0.667208 110.942000 150.515000 135.004000 112.122000 155.334000 135.689000 100.216000 163.384000 142.628000 118.370000 160.564000 139.460000 5.925800 1.798256
Gene:AT1G01050 At180 | At207 | At261 | At290 TATA TATATACA | ATATATAC | CATATATA | TCATATAT 26.5 | 27.5 | 28.5 | 29.5 TAIR9 TAIR:At1g01050 Chr1 33147 | 33148 | 33149 | 33150 30 | 31 | 32 | 33 33140 | 33141 | 33142 | 33143 23 | 24 | 25 | 26 - 33117 447 32670 261579_at Diurnal_Condition:lux-2_LDHH 21 0.890207 911.327000 887.348000 797.999000 894.472000 842.865000 1012.930000 867.541000 874.157000 853.133000 829.239000 817.145000 989.743000 15.496508 29.607743
Gene:AT1G01070 At153 TATA ATATAGAG 26.5 TAIR9 TAIR:At1g01070 Chr1 40891 30 40884 23 - 40861 264 40597 261576_at Diurnal_Condition:lux-2_LDHH 13 0.922431 8.343410 24.402500 24.656600 27.948400 32.331700 32.063800 9.054290 22.315300 22.548100 29.050200 34.518100 30.480200 8.412250 4.336080
Gene:AT2G26560 At227 | At231 | At281 | At304 TATA TATAAATA | CTATAAAT | CCTATAAA | TCCTATAA 27.5 | 28.5 | 29.5 | 30.5 TAIR9 TAIR:At2g26560 Chr2 11295837 | 11295838 | 11295839 | 11295840 31 | 32 | 33 | 34 11295830 | 11295831 | 11295832 | 11295833 24 | 25 | 26 | 27 - 11295806 98 11295708 245038_at Diurnal_Condition:lux-2_LDHH 7 0.860622 5.594580 5.498100 6.397640 5.521490 4.266150 4.662680 5.380450 5.659160 6.840550 5.015410 4.089730 4.976390 23.972946 0.461928
Gene:AT1G01010 At708 | At121 | At050 Y CTTCCTCC | CCTCCCTC | CTCCCTCC 45.5 | 42.5 | 41.5 TAIR9 TAIR:At1g01010 Chr1 3619 | 3622 | 3623 -49 | -46 | -45 3626 | 3629 | 3630 -42 | -39 | -38 + 3668 -92 3760 261585_at Diurnal_Condition:lux-2_LDHH 18 0.793811 6.120620 6.247050 6.911240 6.429470 7.552140 7.141410 6.223480 6.469130 6.980680 6.660970 6.956470 7.759330 1.675586 0.223306
Gene:AT1G01050 At033 | At026 | At006 Y TCTCTCCC | TTCTCTCC | TTTCTCTC 20.5 | 19.5 | 18.5 TAIR9 TAIR:At1g01050 Chr1 33100 | 33101 | 33102 -17 | -16 | -15 33093 | 33094 | 33095 -24 | -23 | -22 - 33117 447 32670 261579_at Diurnal_Condition:lux-2_LDHH 21 0.890207 911.327000 887.348000 797.999000 894.472000 842.865000 1012.930000 867.541000 874.157000 853.133000 829.239000 817.145000 989.743000 15.496508 29.607743
Gene:AT1G01060 At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At073 | At051 | At066 | At713 | At085 | At088 | At715 Y TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | CCTTCTTC | TCCTTCTT | TTCCTTCT | CTTCCTTC | TCTTCCTT 39.5 | 38.5 | 37.5 | 36.5 | 35.5 | 34.5 | 33.5 | 32.5 | 31.5 | 30.5 | 29.5 | 28.5 | 27.5 | 26.5 | 25.5 | 24.5 | 23.5 | 22.5 | 21.5 | 20.5 | 19.5 | 18.5 | 17.5 | 16.5 | 15.5 | 14.5 | 13.5 | 12.5 | 11.5 | 10.5 | 9.5 | 8.5 | 7.5 | 6.5 | 5.5 TAIR9 TAIR:At1g01060 Chr1 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 | 37771 | 37772 | 37773 | 37774 | 37775 | 37776 | 37777 -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 | -8 | -7 | -6 | -5 | -4 | -3 | -2 37736 | 37737 | 37738 | 37739 | 37740 | 37741 | 37742 | 37743 | 37744 | 37745 | 37746 | 37747 | 37748 | 37749 | 37750 | 37751 | 37752 | 37753 | 37754 | 37755 | 37756 | 37757 | 37758 | 37759 | 37760 | 37761 | 37762 | 37763 | 37764 | 37765 | 37766 | 37767 | 37768 | 37769 | 37770 -43 | -42 | -41 | -40 | -39 | -38 | -37 | -36 | -35 | -34 | -33 | -32 | -31 | -30 | -29 | -28 | -27 | -26 | -25 | -24 | -23 | -22 | -21 | -20 | -19 | -18 | -17 | -16 | -15 | -14 | -13 | -12 | -11 | -10 | -9 - 37779 718 37061 261569_at Diurnal_Condition:lux-2_LDHH 1 0.982244 662.997000 148.797000 7.940770 4.271240 4.688610 79.996100 604.855000 147.673000 7.416600 4.672660 4.520060 87.051200 18.302714 123.586541
Gene:AT1G01060 At063 Y TCTTCTTC 14.5 TAIR9 TAIR:At1g01060 Chr1 37797 18 37790 11 - 37779 718 37061 261569_at Diurnal_Condition:lux-2_LDHH 1 0.982244 662.997000 148.797000 7.940770 4.271240 4.688610 79.996100 604.855000 147.673000 7.416600 4.672660 4.520060 87.051200 18.302714 123.586541
Gene:AT1G01060 At042 | At063 | At073 | At051 | At063 | At073 | At051 | At063 | At075 | At083 | At040 | At009 Y CTTCTTCC | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | TTCTTCTT | CTTCTTCT | TCTTCTTC | CTCTTCTT | TCTCTTCT | TTCTCTTC | CTTCTCTT 24.5 | 25.5 | 26.5 | 27.5 | 28.5 | 29.5 | 30.5 | 31.5 | 32.5 | 33.5 | 34.5 | 35.5 TAIR9 TAIR:At1g01060 Chr1 37807 | 37808 | 37809 | 37810 | 37811 | 37812 | 37813 | 37814 | 37815 | 37816 | 37817 | 37818 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 37800 | 37801 | 37802 | 37803 | 37804 | 37805 | 37806 | 37807 | 37808 | 37809 | 37810 | 37811 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 - 37779 718 37061 261569_at Diurnal_Condition:lux-2_LDHH 1 0.982244 662.997000 148.797000 7.940770 4.271240 4.688610 79.996100 604.855000 147.673000 7.416600 4.672660 4.520060 87.051200 18.302714 123.586541
Gene:AT1G01080 At005 Y TTCTTCTC 8.5 TAIR9 TAIR:At1g01080 Chr1 46825 -5 46818 -12 - 46830 41 46789 261577_at Diurnal_Condition:lux-2_LDHH 13 0.973977 138.258000 159.787000 217.718000 326.742000 276.616000 219.052000 130.270000 172.042000 218.214000 325.225000 293.166000 233.632000 7.604002 45.087184
Gene:AT1G01090 At090 Y CTCTCTTT 29.5 TAIR9 TAIR:At1g01090 Chr1 49245 -26 49238 -33 - 49271 105 49166 261583_at Diurnal_Condition:lux-2_LDHH 21 0.973652 2328.740000 1978.910000 1484.640000 1800.780000 2141.690000 2557.830000 2427.320000 1828.930000 1343.730000 1878.860000 2240.930000 2521.020000 14.535912 258.883825
Gene:AT1G01090 At026 Y TTCTCTCC 10.5 TAIR9 TAIR:At1g01090 Chr1 49264 -7 49257 -14 - 49271 105 49166 261583_at Diurnal_Condition:lux-2_LDHH 21 0.973652 2328.740000 1978.910000 1484.640000 1800.780000 2141.690000 2557.830000 2427.320000 1828.930000 1343.730000 1878.860000 2240.930000 2521.020000 14.535912 258.883825
Gene:AT1G01090 At114 Y CCTCCTCT 12.5 TAIR9 TAIR:At1g01090 Chr1 49287 16 49280 9 - 49271 105 49166 261583_at Diurnal_Condition:lux-2_LDHH 21 0.973652 2328.740000 1978.910000 1484.640000 1800.780000 2141.690000 2557.830000 2427.320000 1828.930000 1343.730000 1878.860000 2240.930000 2521.020000 14.535912 258.883825
Gene:AT2G26500 At710 | At348 | At712 | At701 Y TCCTCCTT | CCTCCTTC | TCCTTCCT | CCTTCCTT 45.5 | 44.5 | 42.5 | 41.5 TAIR9 TAIR:At2g26500 Chr2 11270177 | 11270178 | 11270180 | 11270181 -49 | -48 | -46 | -45 11270184 | 11270185 | 11270187 | 11270188 -42 | -41 | -39 | -38 + 11270226 -144 11270370 245044_at Diurnal_Condition:lux-2_LDHH 13 0.924893 6231.150000 6716.330000 7242.360000 7921.990000 7822.740000 7279.950000 6748.010000 6831.920000 7063.210000 8525.920000 7769.450000 7393.560000 7.724875 398.878370
Gene:AT2G26500 At004 | At009 | At040 | At083 | At075 Y TCTTCTCT | CTTCTCTT | TTCTCTTC | TCTCTTCT | CTCTTCTT 25.5 | 24.5 | 23.5 | 22.5 | 21.5 TAIR9 TAIR:At2g26500 Chr2 11270197 | 11270198 | 11270199 | 11270200 | 11270201 -29 | -28 | -27 | -26 | -25 11270204 | 11270205 | 11270206 | 11270207 | 11270208 -22 | -21 | -20 | -19 | -18 + 11270226 -144 11270370 245044_at Diurnal_Condition:lux-2_LDHH 13 0.924893 6231.150000 6716.330000 7242.360000 7921.990000 7822.740000 7279.950000 6748.010000 6831.920000 7063.210000 8525.920000 7769.450000 7393.560000 7.724875 398.878370
Gene:AT2G26500 At020 | At717 | At060 Y CTTCTCCT | TTCTCCTT | CTCCTTTC 10.5 | 9.5 | 7.5 TAIR9 TAIR:At2g26500 Chr2 11270212 | 11270213 | 11270215 -14 | -13 | -11 11270219 | 11270220 | 11270222 -7 | -6 | -4 + 11270226 -144 11270370 245044_at Diurnal_Condition:lux-2_LDHH 13 0.924893 6231.150000 6716.330000 7242.360000 7921.990000 7822.740000 7279.950000 6748.010000 6831.920000 7063.210000 8525.920000 7769.450000 7393.560000 7.724875 398.878370
Gene:AT2G26500 At009 Y CTTCTCTT 14.5 TAIR9 TAIR:At2g26500 Chr2 11270237 11 11270244 18 + 11270226 -144 11270370 245044_at Diurnal_Condition:lux-2_LDHH 13 0.924893 6231.150000 6716.330000 7242.360000 7921.990000 7822.740000 7279.950000 6748.010000 6831.920000 7063.210000 8525.920000 7769.450000 7393.560000 7.724875 398.878370
Gene:AT2G26510 At004 | At009 Y TCTTCTCT | CTTCTCTT 33.5 | 34.5 TAIR9 TAIR:At2g26510 Chr2 11273999 | 11274000 30 | 31 11274006 | 11274007 37 | 38 + 11273969 -149 11274118 245046_at Diurnal_Condition:lux-2_LDHH 13 0.834261 155.758000 197.826000 252.827000 240.225000 230.844000 295.495000 149.906000 187.412000 253.469000 218.381000 223.259000 294.287000 8.811739 16.375934
Gene:AT2G26530 At005 | At051 | At066 Y TTCTTCTC | CTTCTTCT | CCTTCTTC 19.5 | 20.5 | 21.5 TAIR9 TAIR:At2g26530 Chr2 11284041 | 11284042 | 11284043 23 | 24 | 25 11284034 | 11284035 | 11284036 16 | 17 | 18 - 11284018 29 11283989 245041_at Diurnal_Condition:lux-2_LDHH 8 0.832980 4.946760 7.760530 14.988000 7.718940 9.051540 10.608900 4.464230 7.524450 15.709300 8.183020 9.650250 10.487100 4.507244 1.171676
Gene:AT2G26580 At705 | At079 | At035 Y CTCTCCTT | CCTCTCCT | TCCTCTCC 41.5 | 40.5 | 39.5 TAIR9 TAIR:At2g26580 Chr2 11306971 | 11306972 | 11306973 -38 | -37 | -36 11306964 | 11306965 | 11306966 -45 | -44 | -43 - 11307009 270 11306739 245029_at Diurnal_Condition:lux-2_LDHH 11 0.916401 33.558600 147.033000 141.954000 185.596000 142.821000 79.756400 33.414900 134.293000 131.043000 196.945000 156.663000 85.127400 5.225051 32.219407
Gene:AT2G26590 At026 | At006 | At008 | At007 Y TTCTCTCC | TTTCTCTC | CTTTCTCT | TCTTTCTC 19.5 | 18.5 | 17.5 | 16.5 TAIR9 TAIR:At2g26590 Chr2 11315061 | 11315062 | 11315063 | 11315064 -16 | -15 | -14 | -13 11315054 | 11315055 | 11315056 | 11315057 -23 | -22 | -21 | -20 - 11315077 360 11314717 245045_at Diurnal_Condition:lux-2_LDHH 12 0.667208 110.942000 150.515000 135.004000 112.122000 155.334000 135.689000 100.216000 163.384000 142.628000 118.370000 160.564000 139.460000 5.925800 1.798256
Gene:AT1G01010 At723 | At728 | At722 GA CGAGAGAG | GAGAGAGA | AGAGAGAT 32.5 | 33.5 | 34.5 TAIR9 TAIR:At1g01010 Chr1 3697 | 3698 | 3699 29 | 30 | 31 3704 | 3705 | 3706 36 | 37 | 38 + 3668 -92 3760 261585_at Diurnal_Condition:lux-2_LDHH 18 0.793811 6.120620 6.247050 6.911240 6.429470 7.552140 7.141410 6.223480 6.469130 6.980680 6.660970 6.956470 7.759330 1.675586 0.223306
Gene:AT1G01070 At730 | At722 | At728 | At721 | At731 GA GAGAGATA | AGAGAGAT | GAGAGAGA | AGAGAGAG | TAGAGAGA 19.5 | 20.5 | 21.5 | 22.5 | 23.5 TAIR9 TAIR:At1g01070 Chr1 40884 | 40885 | 40886 | 40887 | 40888 23 | 24 | 25 | 26 | 27 40877 | 40878 | 40879 | 40880 | 40881 16 | 17 | 18 | 19 | 20 - 40861 264 40597 261576_at Diurnal_Condition:lux-2_LDHH 13 0.922431 8.343410 24.402500 24.656600 27.948400 32.331700 32.063800 9.054290 22.315300 22.548100 29.050200 34.518100 30.480200 8.412250 4.336080
Gene:AT2G26570 At734 | At721 | At728 | At719 GA AAGAGAGA | AGAGAGAG | GAGAGAGA | AGAGAGAA 11.5 | 10.5 | 9.5 | 8.5 TAIR9 TAIR:At2g26570 Chr2 11299018 | 11299019 | 11299020 | 11299021 -15 | -14 | -13 | -12 11299025 | 11299026 | 11299027 | 11299028 -8 | -7 | -6 | -5 + 11299033 -532 11299565 245028_at Diurnal_Condition:lux-2_LDHH 7 0.942116 108.341000 140.470000 137.941000 117.213000 107.743000 76.155500 107.141000 144.542000 148.389000 127.370000 113.531000 79.171200 1.360257 14.995055
Gene:AT2G26570 At730 GA GAGAGATA 28.5 TAIR9 TAIR:At2g26570 Chr2 11299058 25 11299065 32 + 11299033 -532 11299565 245028_at Diurnal_Condition:lux-2_LDHH 7 0.942116 108.341000 140.470000 137.941000 117.213000 107.743000 76.155500 107.141000 144.542000 148.389000 127.370000 113.531000 79.171200 1.360257 14.995055
* Row count is limited to 100.