お問い合わせ

オープンデータを加工して共有しよう

テーブルデータの変換と公開をサポートするサイト

データセットの情報

Circadian Coexpression (DIURNAL + ATTED-II promoter motif) Full

Circadian Data collected over two days (44 hours) at four hour intervals in various growth conditions. We calculated the Phase of each data by non-linear best fit to a sine wave with a 24 hour period, and similarly calculated the Amplitude. Visually checking the 1000 largest amplitude genes showed a good fit in all cases, though a few genes clearly deviated from sinusoidal behavior. All had a major period of 24 hours. For each gene locus, we added the CEG motifs as calculated by ATTED-II. Gene Loci without expression data or motif data were removed from this database.

References (for ATTED-II):
http://www.ncbi.nlm.nih.gov/pubmed/17130150
References (for DIURNAL)
http://www.ncbi.nlm.nih.gov/pubmed/18419293


Descriptions for each data table:
DiurnalHours_ATTED_COL_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_ATTED_COL_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_ATTED_DD_DDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Dark (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Dark (24h).
DiurnalHours_ATTED_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h).
DiurnalHours_ATTED_LDHH_SM
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Smith method.
DiurnalHours_ATTED_LDHH_ST
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h), by using the Stitt method.
DiurnalHours_ATTED_LER_SD
This collection of Gene Expression Properties are associated with the Arabidopsis Ler (Landsberg-ereta) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_ATTED_LIGHT5_HIF138_13
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-13 (HETEROGENOUS INBRED FAMILY 138-13) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_ATTED_LIGHT5_HIF138_8
This collection of Gene Expression Properties are associated with the Arabidopsis hif138-8 (HETEROGENOUS INBRED FAMILY 138-8) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_ATTED_LIGHT5_znknOX
This collection of Gene Expression Properties are associated with the Arabidopsis tsp-ox (hif138-8) (TANDEM ZINCKNUCKLE PROTEIN-ox) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_ATTED_LL12_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Kay method.
DiurnalHours_ATTED_LL23_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (24h), and subjected to Light (24h) by the Miller method.
DiurnalHours_ATTED_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h).
DiurnalHours_ATTED_LL_LDHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Dark (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_ATTED_LL_LLHC
This collection of Gene Expression Properties are associated with the Arabidopsis Columbia strain 0, grown under the circadian condition Light (12h) Light (12h) / Hot (12h) / Cold (12h), and subjected to Light (24h).
DiurnalHours_ATTED_lhyox_SD
This collection of Gene Expression Properties are associated with the Arabidopsis lhy (lhy-ox) (LATE ELONGATED HYPOCOTYL) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_ATTED_longday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of long day light, that is, Light (16h) Dark (8h) by using the Kay method.
DiurnalHours_ATTED_lux_2_LDHH
This collection of Gene Expression Properties are associated with the Arabidopsis lux-2 (LUX ARRHYTHMO-2) strain, grown under the circadian condition Light (12h) Dark (12h) / Hot (24h).
DiurnalHours_ATTED_phyB9_SD
This collection of Gene Expression Properties are associated with the Arabidopsis phyB9 (PHYTOCHROME B-9) strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h).
DiurnalHours_ATTED_shortday
This collection of Gene Expression Properties are associated with the Arabidopsis Ler strain, grown under the circadian condition of short day light, that is, Light (8h) Dark (16h) by using the Kay method.
63

評価指数

いいね!
2
Loading...

downloadダウンロード

ファイル名
DiurnalHours_ATTED_COL_LDHH
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_COL_SD
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_DD_DDHC
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_LDHC
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.4MB
RDF (Turtle)
2013.1.7
24.6MB
DiurnalHours_ATTED_LDHH_SM
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_LDHH_ST
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_LER_SD
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_LIGHT5_HIF138_13
テーブルデータ (テキスト)
2013.1.7
4.0MB
テーブルデータ (Excel)
2013.1.7
6.6MB
RDF (Turtle)
2013.1.7
24.8MB
DiurnalHours_ATTED_LIGHT5_HIF138_8
テーブルデータ (テキスト)
2013.1.7
4.0MB
テーブルデータ (Excel)
2013.1.7
6.6MB
RDF (Turtle)
2013.1.7
24.8MB
DiurnalHours_ATTED_LIGHT5_znknOX
テーブルデータ (テキスト)
2013.1.7
4.0MB
テーブルデータ (Excel)
2013.1.7
6.6MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_LL12_LDHH
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_LL23_LDHH
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_LLHC
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.4MB
RDF (Turtle)
2013.1.7
24.6MB
DiurnalHours_ATTED_LL_LDHC
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_LL_LLHC
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.4MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_lhyox_SD
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_longday
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.4MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_lux_2_LDHH
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_phyB9_SD
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.3MB
RDF (Turtle)
2013.1.7
24.7MB
DiurnalHours_ATTED_shortday
テーブルデータ (テキスト)
2013.1.7
3.9MB
テーブルデータ (Excel)
2013.1.7
7.4MB
RDF (Turtle)
2013.1.7
24.7MB
投稿者 メッセージ送信
共同編集者
関連するWebサイト
データのリファレンス
合計ダウンロード数 1250
最初に登録した日 Oct 10, 2012
最後に更新した日 Jan 15, 2013

↓画像をクリックすると拡大します LODクラウド(全データセット)を見る

ニュースフィード